Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17n16f
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    91   4e-19
AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical ...    88   5e-18
AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm rec...    31   0.63 
L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy c...    31   0.83 
L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated p...    31   0.83 
AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy...    31   0.83 
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 39/63 (61%), Positives = 51/63 (80%)
 Frame = +1

Query: 112 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 291
           MAPKQRM +AN+  SKN+  RGNV K+ K  ED+YP APWL+ LF+FVVCGSAVF+II+ 
Sbjct: 1   MAPKQRMTLANKQFSKNVNNRGNVAKSLKPAEDKYPAAPWLIGLFVFVVCGSAVFEIIRY 60

Query: 292 IRL 300
           +++
Sbjct: 61  VKM 63


>AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical
           protein T09A12.5 protein.
          Length = 63

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 37/63 (58%), Positives = 49/63 (77%)
 Frame = +1

Query: 112 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 291
           MAPKQRM +AN   SKN+T RGNVPK  K  E ++P + WL+ LFIFVVCGSA+F++I+ 
Sbjct: 1   MAPKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRY 60

Query: 292 IRL 300
           I++
Sbjct: 61  IKV 63


>AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 83 protein.
          Length = 333

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -2

Query: 377 LNFRWIVLLFYCVFDSSSPVVFVI*ASLIDWIIWNTAEPHTTKMKRARSQGA---TGYWS 207
           LN+  I ++ Y +F +S P++  +   +  W+   +A   T K K  + Q     T    
Sbjct: 197 LNYLNIAMIIYLIFCASIPMIISLVCGIKTWLQIRSAIDITDKSKTLQKQERQLFTALLI 256

Query: 206 SFSLVVLG-TFPLIVMF 159
            F +  LG T P++++F
Sbjct: 257 QFIIPFLGNTVPMLILF 273


>L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy
           chain protein.
          Length = 815

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 112 FCFVIKYICQFNNKLKGLEEPQRANFA*HVDKSPIPF 2
           F   + Y   +N K++ L +P++ N + H DK+ +P+
Sbjct: 131 FHIKVSYYEIYNEKIRDLLDPEKVNLSIHEDKNRVPY 167


>L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated
           protein 116 protein.
          Length = 815

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 112 FCFVIKYICQFNNKLKGLEEPQRANFA*HVDKSPIPF 2
           F   + Y   +N K++ L +P++ N + H DK+ +P+
Sbjct: 131 FHIKVSYYEIYNEKIRDLLDPEKVNLSIHEDKNRVPY 167


>AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy
           chain protein.
          Length = 815

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 112 FCFVIKYICQFNNKLKGLEEPQRANFA*HVDKSPIPF 2
           F   + Y   +N K++ L +P++ N + H DK+ +P+
Sbjct: 131 FHIKVSYYEIYNEKIRDLLDPEKVNLSIHEDKNRVPY 167


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 267 CCVPD--NPINKTSLNHEDNWRTA 332
           CC P+  N +N  S+ H  NWRTA
Sbjct: 136 CCFPEVVNYLNTHSVGHVKNWRTA 159


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 252 RSVWLCCVPDNPINKTSLNHEDNWRT 329
           RS+W CC+P    N  S   +  WRT
Sbjct: 275 RSMWSCCIPTTYYNNYSNALKIAWRT 300


>AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical
           protein F41B5.6 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +3

Query: 348 K*QHYPSKVKAQFTPASLHRHERECFRRRPLVPLTVQSWLDVSFTLTGLKRDADT 512
           K  H+P  V+      S+H    E   ++PLV LT    LD S T   +K + DT
Sbjct: 348 KANHHPLSVQHHLQQNSVHTSIAERIDQQPLVELTSGIHLD-SSTAVKIKSNLDT 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,850
Number of Sequences: 27780
Number of extensions: 290368
Number of successful extensions: 764
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)