Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17n04f
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    29   0.53 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    29   0.93 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    29   0.93 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.6  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.1  
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    27   2.1  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   2.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   8.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   8.7  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -2

Query: 746 SAHFFENAANITLTSGY---FFLCSSRHVCTKNA*AVMRPRGL 627
           S H F     I  T GY   +F C+S H CT +  A++   GL
Sbjct: 236 SIHRFRAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVSRAGL 278


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 78   SKQSTSERYSTESS-VDPTTTAAGAKSNYSTATKSITTAVAATTESP-ASFATAEPIF 245
            S +S++  Y+T S+  +P+T    +    S  T +  T   ++TE+P +S  T+ PI+
Sbjct: 1438 SGESSAFTYTTSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIY 1495


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 45  VVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 212
           VV E   S +R K ST++ +ST    +PTTTA  + S  S  T   +  +  +  S
Sbjct: 132 VVYEYHPSSERHK-STNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTS 186


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 447 NTAATTNSTRTHSSCSATTDTGSI 518
           ++AAT+ STR  SS  A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 78  SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
           S  STS   ST SS   T+++  + S+ STA+ S +++   ++ S +S
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 87  STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
           STS  Y + SSV  ++++  + S+ +  + S++T+   +T S +S
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 447 NTAATTNSTRTHSSCSATTDTGSI 518
           ++AAT+ STR  SS  A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 440 LNQYSSNNKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLY 577
           L +YS +  +  +TF   SN +  + YR N P+ +S S    S LY
Sbjct: 100 LIEYSGSAFMPMSTFTPQSNRKPTEAYRRNSPVKKSFSRPSHSLLY 145


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 598 ARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVS 711
           A+  R +  N P+  M+A+ FF    RE+ K   PD +
Sbjct: 5   AKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDAT 42


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 78  SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITT 188
           SK+ TSER   +SSV P+     + S+ S   K + T
Sbjct: 96  SKEITSERKRAKSSVSPSYLTDSSPSDLSVENKVLLT 132


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +3

Query: 48   VAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 227
            V  S+ S      +  E    +SSV   +T+A  + +   +  S  T  A  T  P    
Sbjct: 821  VNPSLDSEPVQLSNMEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENT 880

Query: 228  TAEPI 242
            +AEPI
Sbjct: 881  SAEPI 885


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 66   SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES--PASFATAEP 239
            S  R++ +TS  YS+  +V  +T      S+ STA+  I ++ ++ T S  P +F+++  
Sbjct: 907  SSSRNEGTTS--YSSNITVTSSTLKPSLTSSVSTASSYIASSASSNTLSTEPKTFSSSST 964

Query: 240  I 242
            +
Sbjct: 965  L 965


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,481
Number of Sequences: 5004
Number of extensions: 24593
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)