Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17n04f
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 34 0.14
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388... 33 0.18
04_04_0223 - 23723055-23723223,23723316-23723424,23723588-237236... 32 0.56
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795... 31 0.74
03_01_0185 - 1485023-1485733 30 2.2
06_01_0326 + 2372176-2373057,2373146-2373610 29 3.9
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 29 5.2
01_06_0626 + 30701538-30701939 29 5.2
04_04_0887 + 29095087-29096166 28 6.9
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 28 6.9
05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001 28 9.1
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490... 28 9.1
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 69 RKRSKQSTSERYSTESSVDPTT-TAAGAKSNYSTATKSITTAVAATTESPASFATAEP 239
R+ +K+ST + S+ S AA A ++ S+ T + TTA ++ +PA+ A A+P
Sbjct: 144 RRNTKRSTKKSSSSSSRQGGGAGNAAAAATSSSSTTSTSTTATTSSAAAPAAAAAADP 201
>04_04_0224 -
23738105-23738273,23738364-23738472,23738702-23738804,
23738895-23738926,23739342-23739592,23739639-23739754,
23740271-23740526,23740760-23740847,23740985-23741062,
23741238-23741313,23741532-23741590,23742639-23742711
Length = 469
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 461 NKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLYSKQQ*IRPGCPVQGHTTSP 634
++L K +F N Y +Y G+LP +N +S+ + +R G P+ SP
Sbjct: 290 SELIKGSFDFIGLNYYTSNYAGSLPPSNGLNNSYSTDARANLTAVRNGIPIGPQAASP 347
>04_04_0223 -
23723055-23723223,23723316-23723424,23723588-23723690,
23723781-23723812,23724024-23724241,23724322-23724437,
23725055-23725310,23725719-23725806,23725928-23726005,
23726199-23726274,23726525-23726583,23727715-23728066
Length = 551
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 461 NKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLYSKQQ*IRPGCPVQGHTTSP 634
+KL K F N Y +Y NLP +N +++ + +R G P+ SP
Sbjct: 372 SKLVKGAFDFIGLNYYTANYADNLPPSNGLNNSYTTDSRANLTGVRNGIPIGPQAASP 429
>03_02_0382 -
7958634-7959272,7959358-7959583,7959725-7959810,
7959909-7959989,7960102-7960200,7960348-7960466,
7960557-7960677,7960831-7960881,7961041-7961142,
7962610-7962717,7962877-7962962,7963353-7963449
Length = 604
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 51 AESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFA 227
AE++++ + K++ ER T+ + AA A S ST T + VAA +P + A
Sbjct: 487 AEALEALELEKKTVEERRKTKEETAAVSGAADAASGVTSTVTPAAGAGVAAGAAAPGAGA 546
Query: 228 TA 233
TA
Sbjct: 547 TA 548
>03_01_0185 - 1485023-1485733
Length = 236
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 236
S R S ++ P TT ++ +TAT + TT V T +P + A+
Sbjct: 35 SVVSRLSAAGNISPATTTPPTMTSSATATSAKTTRVTVPTPAPNTVHDAD 84
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -3
Query: 133 VVGSTDDSVEYRSLVDCFDRFLDLTDSATTKILNTNEH 20
V+GS++ +++ S+ +C D +D+TD +T I +N H
Sbjct: 252 VMGSSNIWIDHVSMSNCSDGLIDITDGSTA-ITISNSH 288
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +1
Query: 625 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVI 717
NKP+ +A+ F++ R+++K+K+P+V +
Sbjct: 33 NKPKRPPSAFFVFMEQFRKDYKEKHPNVKQV 63
>01_06_0626 + 30701538-30701939
Length = 133
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 63 KSRKRSKQSTSERYSTESSVDPTTTAAGAKSN--YSTATKSITTAVAATTESPASFA 227
K K + TS + + + P+ TA G ++ ++TAT S+ + T+ SP++ A
Sbjct: 52 KHEKPTTTCTSTNPMSTTVMPPSLTATGTDTSDHHATATASVFNGLGRTSSSPSNVA 108
>04_04_0887 + 29095087-29096166
Length = 359
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 450 TAATTNSTRTHSSCSATTDTGSIT 521
T AT RTH S SA+ TG++T
Sbjct: 44 TTATWRRARTHPSASASASTGTLT 67
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 440 LNQYSSNNKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLYSKQQ*IRPGCPVQG 619
+ Q+ + NKL K K+ + N + G ++RS +S + ++ +R G P G
Sbjct: 343 MKQFRAMNKLKKVALKVVAENLSDEEITGLKEMFRSLDTDNSGTITLEE--LRSGLPKLG 400
Query: 620 HTTSPAVA*QLMHS 661
S + QLM +
Sbjct: 401 TKISESEIRQLMEA 414
>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
Length = 708
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 39 ILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTAT-KSITTAVAATT 206
+L+V + SR+R+ + + + P +TA+G +++T K I A AA T
Sbjct: 280 VLLVVCTAASRRRAANGEVGKTAAARGLTPPSTASGELGEVTSSTSKEIALAAAAAT 336
>03_02_0010 +
4903473-4903525,4904117-4904175,4904285-4904355,
4904469-4904585,4907001-4907024,4907055-4907117,
4907303-4907407,4907552-4907602,4907702-4908535
Length = 458
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 676 REEHKKKYPDVSVI 717
REEH KKYPD VI
Sbjct: 66 REEHLKKYPDAKVI 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,119,478
Number of Sequences: 37544
Number of extensions: 155828
Number of successful extensions: 703
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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