Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17n04f
(747 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X62534-1|CAA44395.1| 209|Homo sapiens HMG-2 protein. 78 3e-14
M83665-1|AAA58659.1| 209|Homo sapiens high mobility group 2 pro... 78 3e-14
BT019783-1|AAV38586.1| 208|Homo sapiens high-mobility group box... 78 3e-14
BT019782-1|AAV38585.1| 209|Homo sapiens high-mobility group box... 78 3e-14
BC100019-1|AAI00020.1| 209|Homo sapiens HMGB2 protein protein. 78 3e-14
BC001063-1|AAH01063.1| 209|Homo sapiens high-mobility group box... 78 3e-14
BX537505-1|CAD97768.1| 127|Homo sapiens hypothetical protein pr... 77 7e-14
X12597-1|CAA31110.1| 215|Homo sapiens protein ( Human mRNA for ... 75 2e-13
U51677-1|AAB08987.1| 215|Homo sapiens non-histone chromatin pro... 75 2e-13
EU012027-1|ABS29271.1| 215|Homo sapiens high-mobility group box... 75 2e-13
EF157968-1|ABM47301.1| 215|Homo sapiens high mobility group box... 75 2e-13
CR456863-1|CAG33144.1| 215|Homo sapiens HMGB1 protein. 75 2e-13
BT020159-1|AAV38961.1| 215|Homo sapiens high-mobility group box... 75 2e-13
BT006940-1|AAP35586.1| 215|Homo sapiens high-mobility group box... 75 2e-13
BC141844-1|AAI41845.1| 215|Homo sapiens high-mobility group box... 75 2e-13
BC067732-1|AAH67732.1| 215|Homo sapiens high-mobility group box... 75 2e-13
BC066889-1|AAH66889.1| 215|Homo sapiens high-mobility group box... 75 2e-13
BC030981-1|AAH30981.1| 215|Homo sapiens high-mobility group box... 75 2e-13
BC003378-1|AAH03378.1| 215|Homo sapiens high-mobility group box... 75 2e-13
AY377859-1|AAQ91389.1| 215|Homo sapiens high mobility group pro... 75 2e-13
AL353648-4|CAI15606.1| 97|Homo sapiens high-mobility group box... 75 2e-13
AL353648-3|CAI15603.1| 158|Homo sapiens high-mobility group box... 75 2e-13
AL353648-2|CAI15601.1| 162|Homo sapiens high-mobility group box... 75 2e-13
AL353648-1|CAI15600.1| 215|Homo sapiens high-mobility group box... 75 2e-13
AF281043-1|AAK64599.1| 50|Homo sapiens high mobility group 1 p... 75 2e-13
AF255609-1|AAF71287.1| 50|Homo sapiens high mobility group pro... 75 2e-13
AB208998-1|BAD92235.1| 176|Homo sapiens high-mobility group box... 75 2e-13
L08048-1|AAA64970.1| 216|Homo sapiens HMG-1 protein. 73 1e-12
BC070482-1|AAH70482.1| 200|Homo sapiens HMGB3 protein protein. 73 1e-12
D63874-1|BAA09924.1| 215|Homo sapiens HMG-1 protein. 72 2e-12
AC007277-1|AAF19244.1| 191|Homo sapiens WUGSC:H_NH0244E06.1 pro... 71 4e-12
Y10043-1|CAA71143.1| 200|Homo sapiens high mobility group prote... 71 6e-12
L05085-1|AAC15850.1| 109|Homo sapiens non-histone chromosomal p... 71 6e-12
Z95115-3|CAB62951.1| 211|Homo sapiens high-mobility group (nonh... 62 3e-09
Z17240-1|CAA78938.1| 186|Homo sapiens HMG2B protein. 44 4e-04
L79988-1|AAL77438.1| 403|Homo sapiens nuclear autoantigen protein. 38 0.029
AF056322-1|AAC39790.1| 879|Homo sapiens SP100-HMG nuclear autoa... 38 0.029
AC010149-1|AAY14879.1| 843|Homo sapiens unknown protein. 38 0.029
AF378670-1|AAK57703.1| 26|Homo sapiens SP100 protein. 38 0.038
AF076675-2|AAF39781.1| 181|Homo sapiens SP100-HMG protein. 38 0.038
DQ207367-1|ABB22048.1| 186|Homo sapiens HMG2-like protein protein. 36 0.15
BC021180-1|AAH21180.1| 186|Homo sapiens high-mobility group box... 36 0.20
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 33 1.1
BC041155-1|AAH41155.1| 311|Homo sapiens SRRM2 protein protein. 33 1.1
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 33 1.1
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 33 1.1
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 33 1.1
AB015644-1|BAA34957.1| 229|Homo sapiens RNA binding protein pro... 33 1.1
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 33 1.1
>X62534-1|CAA44395.1| 209|Homo sapiens HMG-2 protein.
Length = 209
Score = 78.2 bits (184), Expect = 3e-14
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +1
Query: 625 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
NKPRG+M++YAFFVQTCREEHKKK+PD SV FA FSKKC+E
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSE 47
>M83665-1|AAA58659.1| 209|Homo sapiens high mobility group 2
protein protein.
Length = 209
Score = 78.2 bits (184), Expect = 3e-14
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +1
Query: 625 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
NKPRG+M++YAFFVQTCREEHKKK+PD SV FA FSKKC+E
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSE 47
>BT019783-1|AAV38586.1| 208|Homo sapiens high-mobility group box 2
protein.
Length = 208
Score = 78.2 bits (184), Expect = 3e-14
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +1
Query: 625 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
NKPRG+M++YAFFVQTCREEHKKK+PD SV FA FSKKC+E
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSE 47
>BT019782-1|AAV38585.1| 209|Homo sapiens high-mobility group box 2
protein.
Length = 209
Score = 78.2 bits (184), Expect = 3e-14
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +1
Query: 625 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
NKPRG+M++YAFFVQTCREEHKKK+PD SV FA FSKKC+E
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSE 47
>BC100019-1|AAI00020.1| 209|Homo sapiens HMGB2 protein protein.
Length = 209
Score = 78.2 bits (184), Expect = 3e-14
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +1
Query: 625 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
NKPRG+M++YAFFVQTCREEHKKK+PD SV FA FSKKC+E
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSE 47
>BC001063-1|AAH01063.1| 209|Homo sapiens high-mobility group box 2
protein.
Length = 209
Score = 78.2 bits (184), Expect = 3e-14
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +1
Query: 625 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
NKPRG+M++YAFFVQTCREEHKKK+PD SV FA FSKKC+E
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSE 47
>BX537505-1|CAD97768.1| 127|Homo sapiens hypothetical protein
protein.
Length = 127
Score = 77.0 bits (181), Expect = 7e-14
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = +1
Query: 592 NKARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
N RM + P KP+G+M+AYAFFVQTCREEHKKK P+V V FA FSKKC+E
Sbjct: 27 NTVRMAKGDP-KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSE 77
>X12597-1|CAA31110.1| 215|Homo sapiens protein ( Human mRNA for
high mobility group-1 protein (HMG-1). ).
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>U51677-1|AAB08987.1| 215|Homo sapiens non-histone chromatin
protein HMG1 protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>EU012027-1|ABS29271.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>EF157968-1|ABM47301.1| 215|Homo sapiens high mobility group box 1
protein protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>CR456863-1|CAG33144.1| 215|Homo sapiens HMGB1 protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>BT020159-1|AAV38961.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>BT006940-1|AAP35586.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>BC141844-1|AAI41845.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>BC067732-1|AAH67732.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>BC066889-1|AAH66889.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>BC030981-1|AAH30981.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>BC003378-1|AAH03378.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AY377859-1|AAQ91389.1| 215|Homo sapiens high mobility group
protein 1 protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AL353648-4|CAI15606.1| 97|Homo sapiens high-mobility group box 1
protein.
Length = 97
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AL353648-3|CAI15603.1| 158|Homo sapiens high-mobility group box 1
protein.
Length = 158
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AL353648-2|CAI15601.1| 162|Homo sapiens high-mobility group box 1
protein.
Length = 162
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AL353648-1|CAI15600.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AF281043-1|AAK64599.1| 50|Homo sapiens high mobility group 1
protein protein.
Length = 50
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AF255609-1|AAF71287.1| 50|Homo sapiens high mobility group
protein HMG1 protein.
Length = 50
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AB208998-1|BAD92235.1| 176|Homo sapiens high-mobility group box 1
variant protein.
Length = 176
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 10 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 49
>L08048-1|AAA64970.1| 216|Homo sapiens HMG-1 protein.
Length = 216
Score = 72.9 bits (171), Expect = 1e-12
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KP G+M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>BC070482-1|AAH70482.1| 200|Homo sapiens HMGB3 protein protein.
Length = 200
Score = 72.9 bits (171), Expect = 1e-12
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KP+G+M+AYAFFVQTCREEHKKK P+V V FA FSKKC+E
Sbjct: 8 KPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSE 47
>D63874-1|BAA09924.1| 215|Homo sapiens HMG-1 protein.
Length = 215
Score = 72.1 bits (169), Expect = 2e-12
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPR +M++YAFFVQTCREEHKKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE 47
>AC007277-1|AAF19244.1| 191|Homo sapiens WUGSC:H_NH0244E06.1
protein.
Length = 191
Score = 70.9 bits (166), Expect = 4e-12
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KPRG+M++YAFFVQTCREE KKK+PD SV F+ FSKKC+E
Sbjct: 8 KPRGKMSSYAFFVQTCREECKKKHPDASVNFSEFSKKCSE 47
>Y10043-1|CAA71143.1| 200|Homo sapiens high mobility group protein
2a protein.
Length = 200
Score = 70.5 bits (165), Expect = 6e-12
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KP+G+ +AYAFFVQTCREEHKKK P+V V FA FSKKC+E
Sbjct: 8 KPKGKTSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSE 47
>L05085-1|AAC15850.1| 109|Homo sapiens non-histone chromosomal
protein protein.
Length = 109
Score = 70.5 bits (165), Expect = 6e-12
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KP+G+M+AYAFFVQTCREEHKK P+V V FA FSKKC+E
Sbjct: 8 KPKGKMSAYAFFVQTCREEHKKXNPEVPVNFAEFSKKCSE 47
>Z95115-3|CAB62951.1| 211|Homo sapiens high-mobility group
(nonhistone chromosomal) protein 1-like 10 protein.
Length = 211
Score = 61.7 bits (143), Expect = 3e-09
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
K RG+M+++AFF QTCRE HKKK+PD SV + FSKKC+E
Sbjct: 8 KLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSE 47
>Z17240-1|CAA78938.1| 186|Homo sapiens HMG2B protein.
Length = 186
Score = 44.4 bits (100), Expect = 4e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +1
Query: 676 REEHKKKYPDVSVIFAAFSKKCAE 747
REEHKKK+PD SV FA FSKKC+E
Sbjct: 1 REEHKKKHPDSSVNFAEFSKKCSE 24
>L79988-1|AAL77438.1| 403|Homo sapiens nuclear autoantigen protein.
Length = 403
Score = 38.3 bits (85), Expect = 0.029
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 664 VQTCREEHKKKYPDVSVIFAAFSKKCAE 747
V C EEHKKK PD SV F+ F KKC+E
Sbjct: 219 VDPC-EEHKKKNPDASVKFSEFLKKCSE 245
>AF056322-1|AAC39790.1| 879|Homo sapiens SP100-HMG nuclear
autoantigen protein.
Length = 879
Score = 38.3 bits (85), Expect = 0.029
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 664 VQTCREEHKKKYPDVSVIFAAFSKKCAE 747
V C EEHKKK PD SV F+ F KKC+E
Sbjct: 695 VDPC-EEHKKKNPDASVKFSEFLKKCSE 721
>AC010149-1|AAY14879.1| 843|Homo sapiens unknown protein.
Length = 843
Score = 38.3 bits (85), Expect = 0.029
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 664 VQTCREEHKKKYPDVSVIFAAFSKKCAE 747
V C EEHKKK PD SV F+ F KKC+E
Sbjct: 659 VDPC-EEHKKKNPDASVKFSEFLKKCSE 685
>AF378670-1|AAK57703.1| 26|Homo sapiens SP100 protein.
Length = 26
Score = 37.9 bits (84), Expect = 0.038
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 679 EEHKKKYPDVSVIFAAFSKKCAE 747
EEHKKK PD SV F+ F KKC+E
Sbjct: 1 EEHKKKNPDASVKFSEFLKKCSE 23
>AF076675-2|AAF39781.1| 181|Homo sapiens SP100-HMG protein.
Length = 181
Score = 37.9 bits (84), Expect = 0.038
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 679 EEHKKKYPDVSVIFAAFSKKCAE 747
EEHKKK PD SV F+ F KKC+E
Sbjct: 1 EEHKKKNPDASVKFSEFLKKCSE 23
>DQ207367-1|ABB22048.1| 186|Homo sapiens HMG2-like protein protein.
Length = 186
Score = 35.9 bits (79), Expect = 0.15
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KP+ +++Y F+ R + K++ P+ V F FS+KC+E
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSE 47
>BC021180-1|AAH21180.1| 186|Homo sapiens high-mobility group box 4
protein.
Length = 186
Score = 35.5 bits (78), Expect = 0.20
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 628 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
KP+ +++Y F+ R + K++ P V F FS+KC+E
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPSTYVGFKEFSRKCSE 47
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 63 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 221
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 243 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
>BC041155-1|AAH41155.1| 311|Homo sapiens SRRM2 protein protein.
Length = 311
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 63 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 221
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 147 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 204
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 63 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 221
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 243 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 63 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 221
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 208 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 265
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 63 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 221
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 33 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 90
>AB015644-1|BAA34957.1| 229|Homo sapiens RNA binding protein
protein.
Length = 229
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 63 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 221
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 47 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 104
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 63 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 221
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 291 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 348
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,225,582
Number of Sequences: 237096
Number of extensions: 896999
Number of successful extensions: 2892
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2891
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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