Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17n04f
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 52 4e-07
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 52 4e-07
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 52 4e-07
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 52 4e-07
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 36 0.030
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 36 0.040
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 32 0.38
Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical p... 31 0.87
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 31 1.1
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 31 1.1
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 31 1.1
Z70205-3|CAD44095.1| 191|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 1.5
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 30 1.5
Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 2.6
U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical ... 29 2.6
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 3.5
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 3.5
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 29 3.5
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 29 4.6
U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical pr... 29 4.6
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 4.6
D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein su... 29 4.6
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 4.6
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 29 4.6
Z83219-7|CAB05698.2| 473|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z80217-10|CAB02296.2| 473|Caenorhabditis elegans Hypothetical p... 28 6.1
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 6.1
U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF101318-8|AAC69343.2| 342|Caenorhabditis elegans Hypothetical ... 28 6.1
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 6.1
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 28 6.1
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 28 8.1
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 28 8.1
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 616 RPYNKP--RGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
R KP RG+ + Y FFV+ C EEHKKKYP+ +V SKKC+E
Sbjct: 37 RDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSE 82
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 616 RPYNKP--RGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
R KP RG+ + Y FFV+ C EEHKKKYP+ +V SKKC+E
Sbjct: 38 RDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSE 83
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 616 RPYNKP--RGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
R KP RG+ + Y FFV+ C EEHKKKYP+ +V SKKC+E
Sbjct: 38 RDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSE 83
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 616 RPYNKP--RGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAE 747
R KP RG+ + Y FFV+ C EEHKKKYP+ +V SKKC+E
Sbjct: 38 RDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSE 83
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +3
Query: 57 SVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 212
+ +S S ST+ +TES+ + T+T+ + + ST+T + +T +TTES
Sbjct: 218 TTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTSTSTDSTTTESTTES 269
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +3
Query: 57 SVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 236
+ +S S ++++ +TES+ + TT + ++ ST T+S +T+ +TT + +T E
Sbjct: 214 TTESTTESTSTSTDSTTTESTTESTTESTSTSTD-STTTESTSTSTDSTTTESTTESTTE 272
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 84 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
+ST+E ST +S D TTT + + S ST T+S T + TTES ++
Sbjct: 236 ESTTE--STSTSTDSTTTESTSTSTDSTTTESTTES---TTESTST 276
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 105 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 212
+T S+ TTT + ST+T + +T +TTES
Sbjct: 182 TTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTES 217
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 57 SVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFAT 230
S S + +TS ST +S D TTT + +S T + T+ + TTES T
Sbjct: 185 STTSSTTTTTATSTTESTSTSTDSTTTESTTES---TTESTSTSTDSTTTESTTESTT 239
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 35.5 bits (78), Expect = 0.040
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 18 VCSFV-LRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAV 194
+C+ V L+ V A K+ KR + ST + PTTT A A + A ++TT
Sbjct: 169 ICNAVKLQDFVNANCRKTCKRCTSGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTA 228
Query: 195 AATTESPASFA 227
A TT + A+ A
Sbjct: 229 AVTTTTVAAAA 239
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 233
++QST T S PTT A GA + + S + T S +S ATA
Sbjct: 484 TQQSTKPTIGTSMSSGPTTVAPGASTESTVLQSSTPSGTTVTLPSGSSTATA 535
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAK-SNYSTATKSITTAVAATTESPASFATAEPI 242
S ST E ESSV + + G+ ++ STA++S + V+A+TES S ++ I
Sbjct: 1135 STGSTGESTILESSVSTVSVSTGSTITDGSTASRSSVSTVSASTESTVSGGSSASI 1190
>Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical
protein D1086.6 protein.
Length = 282
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 39 ILVVAESVKSRKRSKQSTSERY--STESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 212
++ +ES S+ + ST+ S+ ++ +PTT+ +T T S TT TT+
Sbjct: 138 VVDTSESSTSQSTTTPSTTTTIIVSSTTTTNPTTSTTPTTPTTTTPTTSTTTTARGTTDI 197
Query: 213 PASFATAE 236
PA + E
Sbjct: 198 PAPPSVVE 205
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 45 VVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASF 224
V E ++ K ++ ST E STE+S + TTT++ + + TT A T +
Sbjct: 174 VSVEEEQTVKSTEASTEEEKSTEASEEATTTSSETSETTEESEEEETTTKPAKTHKSSKT 233
Query: 225 AT 230
T
Sbjct: 234 TT 235
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
T06D8.1b protein.
Length = 3653
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAK-SNYSTATKSITTAVAATTESPASFATAEPI 242
S + T+ TE S + TTT+A + S T T ++ +TTE+PA F T I
Sbjct: 2846 SSEETTTSAVTEGSGEETTTSAVTEGSGEETTTSAVPEGENSTTEAPA-FVTGSEI 2900
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAK-SNYSTATKSITTAVAATTESPASFATAEPI 242
S + T+ TE S + TTT+A + S T T ++ +TTE+PA F T I
Sbjct: 2846 SSEETTTSAVTEGSGEETTTSAVTEGSGEETTTSAVPEGENSTTEAPA-FVTGSEI 2900
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAK-SNYSTATKSITTAVAATTESPASFATAEPI 242
S + T+ TE S + TTT+A + S T T ++ +TTE+PA F T I
Sbjct: 2846 SSEETTTSAVTEGSGEETTTSAVTEGSGEETTTSAVPEGENSTTEAPA-FVTGSEI 2900
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAK-SNYSTATKSITTAVAATTESPASFATAEPI 242
S + T+ TE S + TTT+A + S T T ++ +TTE+PA F T I
Sbjct: 2846 SSEETTTSAVTEGSGEETTTSAVTEGSGEETTTSAVPEGENSTTEAPA-FVTGSEI 2900
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAK-SNYSTATKSITTAVAATTESPASFATAEPI 242
S + T+ TE S + TTT+A + S T T ++ +TTE+PA F T I
Sbjct: 2846 SSEETTTSAVTEGSGEETTTSAVTEGSGEETTTSAVPEGENSTTEAPA-FVTGSEI 2900
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAK-SNYSTATKSITTAVAATTESPASFATAEPI 242
S + T+ TE S + TTT+A + S T T ++ +TTE+PA F T I
Sbjct: 2846 SSEETTTSAVTEGSGEETTTSAVTEGSGEETTTSAVPEGENSTTEAPA-FVTGSEI 2900
>Z70205-3|CAD44095.1| 191|Caenorhabditis elegans Hypothetical
protein C11H1.8 protein.
Length = 191
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 66 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAA 200
SR+ SK STS +T+SS+ TTA ++ T + +AA
Sbjct: 99 SRRLSKPSTSSTRATQSSMTNGTTATQTVPHFEVPTAQVAKLLAA 143
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +3
Query: 48 VAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 227
VA+S KSRK+S ++T S +S TTT+ ST+TK TT+ ++T SP+ A
Sbjct: 653 VAKS-KSRKKSLKNTP---SVPTST-ITTTSTTTNKPTSTSTKQ-TTSSSSTEHSPSPMA 706
Query: 228 TA 233
T+
Sbjct: 707 TS 708
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 90 TSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
T+E+ +T+ TTT K+ T T+ TT+ +ATTE+ S
Sbjct: 813 TTEKSTTQEETTTTTTTT-EKTTSKTTTEKPTTSESATTETTTS 855
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAKSNYS--TATKSITTAVAATTESPASFATAE 236
++ +TSE +TES+ T++A +S+ + T T S T+ T+ES A+F T E
Sbjct: 850 TETTTSEPSTTESTTVDTSSATTEESSTAAETTTTSAETSETTTSES-AAFITGE 903
>Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical
protein F08G5.7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = +3
Query: 6 SAEIVCSFVLRILVVAESV--KSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKS 179
S +I+C + R +V + K + TS T ++V T K++ ST T
Sbjct: 193 SIQIICKYCPRETTSTTTVTPTTTKAATIKTSTTTVTPTTVTTTKAPTTTKTSTSTTTPK 252
Query: 180 ITTAVAATTE----SPASFATAEPI 242
TT TT+ SP S + PI
Sbjct: 253 FTTTTIQTTKKITTSPTSTTASIPI 277
>Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical
protein C11H1.5 protein.
Length = 528
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 105 STESSVDPTTTAAGAKSNYSTA---TKSITTAVAATTESPASFATA 233
STESS+D TT + ST T + T +A+T S S+ATA
Sbjct: 327 STESSIDFTTATESTSTPTSTTSDITSTTTAPTSASTYSTDSWATA 372
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 84 QSTSERYSTESSVDPTTTAAGAKSNYST 167
+STS ST S + TTTA + S YST
Sbjct: 339 ESTSTPTSTTSDITSTTTAPTSASTYST 366
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
+T+ +T ++V TTT + +T T + TT TT +PA+
Sbjct: 205 TTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPAT 249
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFAT 230
+T+ T ++ PTTT + +T T TT ATT S + T
Sbjct: 211 TTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTT 258
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 239
+T+ T ++ PTTT + +T T + T TTE+ + T P
Sbjct: 75 TTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTP 125
>U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical
protein C06G1.2 protein.
Length = 182
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 84 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATT 206
++T+E +T ++V+ TTT A + + T + TT ATT
Sbjct: 80 ETTTEAETTTTTVESTTTTTEATTTEAATTTTTTTEEPATT 120
>AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical
protein Y71F9AL.9 protein.
Length = 314
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 39 ILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPA 218
+ V A K K K T+ +T+S+ P AA A + + A+ S+T + AA +
Sbjct: 66 VSVTAAKKKKNKSKKTETAAPETTQSAPAPAK-AAPAPTVAAPASSSVTKSAAAPKPVVS 124
Query: 219 SFATAEPI 242
+ A A+P+
Sbjct: 125 APAPADPL 132
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPI 242
+T+ER S ++ TTT A + ST T+ T ATTE+P + T E +
Sbjct: 291 TTTERMSPSTTKTSTTTTAKPTTTRSTTTQRPQTV--ATTEAPTT-TTVEDV 339
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +3
Query: 87 STSERYSTESSVDP-TTTAAGAKSNYSTATKSITTAVAATTES-----PASFATAE 236
+T E +TE++++ TTT S +T T + TTA TT S P + AT E
Sbjct: 274 TTEEVTTTETTIEAQTTTTTERMSPSTTKTSTTTTAKPTTTRSTTTQRPQTVATTE 329
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 84 QSTSERYSTES-SVDPTTTAAGAKSNYSTATKSITTAVAATTES 212
+ST E ST S S TTT + + +T + TT + TTES
Sbjct: 198 KSTEEPTSTPSTSTSTTTTTTTSTTTTTTEAPTTTTTIKTTTES 241
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 108 TESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 239
T +S PT + + + ST T S +T A +T SP++ ++ P
Sbjct: 492 TSTSNQPTPSTSNPTTPKSTVTASPSTTGATSTASPSTITSSAP 535
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSI---TTAVAATTESPASFATAEP 239
+TS ST S+ T A S +T + S +TAV++TT SP++ + P
Sbjct: 800 TTSGAASTTGSITSTQQATSTSSVITTGSTSAPQSSTAVSSTTTSPSTTTGSTP 853
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSI----TTAVAATTESPASFA 227
S TSE+YS+ S TTT S ST T S A A+TE+P S A
Sbjct: 763 SVSRTSEQYSSSSPSSDTTT-MDVTSTVSTTTSSTFIAKPQATTASTENPESAA 815
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
ST++ ++ S+ TTA + ST+T S+TT++A+T+ S
Sbjct: 563 STTDLATSSSTSVFNTTARSSSLPGSTSTMSVTTSIASTSPETTS 607
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 123 DPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 233
DPTTTA + ST+T + TT VA+T+ + +TA
Sbjct: 23 DPTTTATSTTTVPSTSTVT-TTTVASTSSGSTTASTA 58
>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
protein C36B1.8b protein.
Length = 1052
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 84 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
Q++S+ +S T + +N ST+T SIT+ TT P+S
Sbjct: 76 QNSSQIGQNSNSSHSVTNDNTSSNNASTSTSSITSTTTTTTTVPSS 121
>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
protein C36B1.8a protein.
Length = 1049
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 84 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
Q++S+ +S T + +N ST+T SIT+ TT P+S
Sbjct: 76 QNSSQIGQNSNSSHSVTNDNTSSNNASTSTSSITSTTTTTTTVPSS 121
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 239
+T+ +T +++ PTTT K + T+ +TT V + ++ A+ T EP
Sbjct: 464 TTTTTTTTTTTLAPTTTTEEEKEETTETTEKVTT-VGKSKKTKATTTTEEP 513
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 60 VKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITT--AVAATTESPASFATA 233
+K+ K + ST+ T ++ + TT + +T + TT + TT+ P + T
Sbjct: 307 IKTTKVTPTSTTTEIPTTTTTEEATTTTEEITTTTTKAPTTTTTQSTTTTTQLPTTTTTT 366
Query: 234 EP 239
EP
Sbjct: 367 EP 368
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFAT 230
S STS ST +S +T+ + + S + T+S TT A +T + +S AT
Sbjct: 95 SSPSTSTSTSTSTST--STSTSRSTSTVTPTTRSSTTTTATSTPTSSSKAT 143
>U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical
protein C03G5.1 protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 740 HFFENAANITLTSGY---FFLCSSRHVCTKNA*AVMRPRGL 627
H F + + T GY FF C+S H CT + A+ G+
Sbjct: 226 HRFRSKNTVLATGGYGRAFFSCTSAHTCTGDGTALTARAGI 266
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 54 ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATT 206
E + + + +STS STE+S T+T + T TT +A+T+
Sbjct: 207 EEIDTSSSTSRSTSTPSSTEASSTVTSTTTARTTTTMIPTTPTTTTIASTS 257
>D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein
subunit of complex II protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 740 HFFENAANITLTSGY---FFLCSSRHVCTKNA*AVMRPRGL 627
H F + + T GY FF C+S H CT + A+ G+
Sbjct: 226 HRFRSKNTVLATGGYGRAFFSCTSAHTCTGDGTALTARAGI 266
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 54 ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATT 206
E + + + +STS STE+S T+T + T TT +A+T+
Sbjct: 189 EEIDTSSSTSRSTSTPSSTEASSTVTSTTTARTTTTMIPTTPTTTTIASTS 239
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 239
+T+ +T +++ PTTT K + T+ +TT V + ++ A+ T EP
Sbjct: 464 TTTTTTTTTTTLAPTTTTEEEKEETTETTEKVTT-VGKSKKTKATTTTEEP 513
>Z83219-7|CAB05698.2| 473|Caenorhabditis elegans Hypothetical
protein C31C9.1a protein.
Length = 473
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 129 TTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPIF 245
TTT G S + A ++TT TT SP++ + +F
Sbjct: 426 TTTTPGTPSTAAPAAPTVTTTTPGTTTSPSAHLSLLSMF 464
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 84 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPI 242
QSTSER T SV P +T ++ +T + ++ + +P + AT PI
Sbjct: 48 QSTSER--TSRSVSPDSTPVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPI 98
>Z80217-10|CAB02296.2| 473|Caenorhabditis elegans Hypothetical
protein C31C9.1a protein.
Length = 473
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 129 TTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPIF 245
TTT G S + A ++TT TT SP++ + +F
Sbjct: 426 TTTTPGTPSTAAPAAPTVTTTTPGTTTSPSAHLSLLSMF 464
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 90 TSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
TS S+ + PT+T + + S ST T S TTA + +T P+S
Sbjct: 463 TSSSSSSTTVTTPTSTESTSTSPSSTVTTS-TTAPSTSTTGPSS 505
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 90 TSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 221
TS S+ + PT+T + + S ST T S TTA + +T P+S
Sbjct: 463 TSSSSSSTTVTTPTSTESTSTSPSSTVTTS-TTAPSTSTTGPSS 505
>U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical
protein F52E1.5 protein.
Length = 248
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 105 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPI 242
ST S TTT +S +T T + TTA +TT S T +P+
Sbjct: 77 STTSPKPITTTETTTRSTTTTTTTTTTTAAPSTTTSTVKI-TPKPL 121
>AF101318-8|AAC69343.2| 342|Caenorhabditis elegans Hypothetical
protein Y73C8C.2 protein.
Length = 342
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 48 VAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 212
VAE+VK+ + + + + S DP+ T A S S T +I+T TT S
Sbjct: 123 VAENVKNGRWQTRDDQDELAFVCSYDPSLTTTTAPST-SLPTSTISTTKPTTTTS 176
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +2
Query: 512 QHYR--GNLPL-YRSCSNRHSSKLYSKQ 586
QH+ GNL L Y S S+RH S LYS Q
Sbjct: 377 QHHNSTGNLTLSYSSSSSRHQSSLYSPQ 404
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 54 ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFAT 230
E+ + S +T + +T ++ + T+T + S T + T +TESP+S T
Sbjct: 197 ETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTT 255
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +3
Query: 75 RSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 239
+ K T + Y+T S+V P T + T TTA TTE+P T P
Sbjct: 134 KPKPQTGDPYATNSTVKPATAPVTPE-----PTVKNTTAAEPTTEAPPPPTTKAP 183
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 78 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATK-SITTAVAATTESPASFATAEPIF 245
S +T+ +T V TTT + Y+T+T S TT + TT +P PI+
Sbjct: 463 SSSTTTTTTTTPVPVTSTTTEP-TTTTYTTSTSTSTTTTLPPTTSTPKIVVNLTPIY 518
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 57 SVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPA---SFA 227
S S S S + ++ PTTT+ + + T +ITT+ SP+ S
Sbjct: 151 STTSITTSTLSPPSTVQSTTTAKPTTTSTITPTTSADPTSTITTSTTPNPSSPSTVQSTT 210
Query: 228 TAEP 239
TAEP
Sbjct: 211 TAEP 214
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 87 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 236
ST + S T T+ G+ + ST+T TT + TT P+S +TAE
Sbjct: 271 STMSTITLTSDRTSTITSTGSSNPPSTSTVPSTTT-STTTPKPSSPSTAE 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,928,526
Number of Sequences: 27780
Number of extensions: 143583
Number of successful extensions: 941
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -