Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17n03f
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510...    27   5.6  
05_03_0182 + 9332280-9332363,9334212-9334286,9334390-9334437,933...    27   9.7  

>04_04_0838 -
           28550036-28550237,28550595-28550676,28550972-28551011,
           28551342-28551416,28551448-28551543,28551710-28551805,
           28551897-28551974,28552064-28552170,28552450-28552477,
           28552777-28552898,28554106-28554172,28554336-28554508,
           28554763-28554846,28555616-28555733,28556093-28556164,
           28557026-28557118,28557484-28557636,28558000-28558086,
           28559436-28559528,28560416-28560643,28561106-28561207,
           28561390-28561596,28561798-28561846,28562385-28562537,
           28562649-28562712,28562905-28563175,28564008-28564072,
           28564184-28564337
          Length = 1052

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 198 GSTPNTGLYDILPNGPV-GNPCNCSDHFDF 112
           GS PN    DI+P  P   NP    +H DF
Sbjct: 92  GSPPNKAAPDIVPQAPAEENPTPIREHVDF 121


>05_03_0182 +
           9332280-9332363,9334212-9334286,9334390-9334437,
           9334513-9334596,9334905-9334966,9335109-9335206,
           9335281-9335390
          Length = 186

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 22/83 (26%), Positives = 30/83 (36%)
 Frame = +1

Query: 61  IDIDHLPDGV*T*NKLRKIKMIGAVARISNRTVGKNVVKTSVRSGSNGGIPGENLPFDIN 240
           +D+D L D      KL   ++      +  R V K       R  + G   GEN PF + 
Sbjct: 46  VDLDELLDDPEL-EKLHAERIAALKKEVEKREVLKRQGHGEYREITEGDFLGENAPFFVT 104

Query: 241 NKARLTFHMFWFFGSGFAAPFLV 309
                T      F  G AA  L+
Sbjct: 105 KLGIKTLPCVILFKKGIAADRLI 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,711,771
Number of Sequences: 37544
Number of extensions: 237431
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)