Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17n02f
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      280   1e-75
07_01_1201 - 11419851-11419913,11420090-11420311                       32   0.47 
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814...    30   1.9  
03_03_0091 - 14371528-14372661                                         30   2.5  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   3.3  
02_02_0643 + 12590928-12592172,12592609-12592698                       29   5.8  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   5.8  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  280 bits (686), Expect = 1e-75
 Identities = 125/183 (68%), Positives = 154/183 (84%)
 Frame = +1

Query: 184 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 363
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 364 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 543
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 544 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 723
           GDRG  ARASG++A VI HNPD   +R+KLPSGAKK++PSS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPML 180

Query: 724 KAG 732
           KAG
Sbjct: 181 KAG 183



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = +2

Query: 725 KLGRAYHKYKVKRNCWPYVRGCCHEP 802
           K G AYHKY+VKRNCWP VRG    P
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRGVAMNP 206


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 710 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 531
           ++ PPP  +P +P     R+   P G        +G  P        A  R+P +P+F S
Sbjct: 12  ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70

Query: 530 RL 525
           R+
Sbjct: 71  RV 72


>03_06_0376 +
           33479776-33479958,33481055-33481236,33481345-33481469,
           33481858-33482057,33482629-33482762,33483095-33483158,
           33483764-33484441,33484723-33484839
          Length = 560

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 180 YDPSLKDFIKSN*LNVGLSFSLYISYPVIKFKD 82
           YD  L D  K+  L + LS  +Y+  PVIKFKD
Sbjct: 366 YDCILDDETKNIFLPIHLSEEVYVGDPVIKFKD 398


>03_03_0091 - 14371528-14372661
          Length = 377

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -1

Query: 698 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 525
           PPA  P      D      P G+  T      G+ P + A    A A    L+P+F   +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313

Query: 524 HTMVPSGIAPTGITFP 477
             M+ +G+AP  +  P
Sbjct: 314 RAMLTAGMAPPSLEPP 329


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 570 LWKLRHCDWT 599
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = -1

Query: 806 YRVHGNTHVHMASSYV*PCTCGMPFPAFKIGLSIRPPPATIPTMPLLLDGRTFLAPDGSF 627
           Y V    H+ M   +V      + F  FK  L ++PP     T+  L D   FL    SF
Sbjct: 265 YLVESRGHLLMVVRFVSTEKATVAFDVFK--LELKPPSWKKLTLDTLADQTIFLGRGCSF 322

Query: 626 TLVRLASGLCP 594
            +    S  CP
Sbjct: 323 AVEMRKSSQCP 333


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 601 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 512
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,070,654
Number of Sequences: 37544
Number of extensions: 514862
Number of successful extensions: 1331
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)