Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17m23f
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 75 8e-15
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 3.8
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.8
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 3.8
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 3.8
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 3.8
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 26 6.6
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 26 6.6
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 6.6
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.6
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 75.4 bits (177), Expect = 8e-15
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 5/215 (2%)
Frame = +2
Query: 113 GVAGQSITLANSIIGVGILAMPYCFQQCXXXXXXXXXXXXXXVSRLCCYFLLK-SALLAR 289
G I LAN+I+G GIL++P F + S L YF+ + +A L R
Sbjct: 20 GFFSSVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQCAARLPR 79
Query: 290 -RRNFEFLAFHVFGPAGKMAVEIGIIGFLMGTCIAYFVVVGDLGPQIISKMLNVNQSDIL 466
+ +F +A H F P+ + + I G ++Y V+VGDL PQ I+ L ++ L
Sbjct: 80 GKASFAAVAKHTF-PSLAVVFDASIAVKCFGVAVSYLVIVGDLMPQ-IAPSLGLSSPMFL 137
Query: 467 RTSIMVVVSLVCVLPLGLLRNVDSLSNVSAATICFYLCLVVKVITEATSQLFEEELQNRM 646
R +V +L + PL L+ +DSL + S ++ LC +V ++ + + ++ +
Sbjct: 138 RRQTWIVFALFVLTPLSFLKRLDSLRHTSVISL-IALCYLVFIV--LYHFIIGDTVKGEI 194
Query: 647 ELWKPS---GVLQCVPIFSMALFCQTQLFEIFESL 742
+ P G L +P+F C F + +
Sbjct: 195 RYFVPESGFGYLSVLPVFVFGFTCHQNAFSVINEV 229
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 458 DILRTSIMVVVSLVCVLPLGLLRNVDSLSNVSAATICFYLCLV 586
D LRT+ + + C L G+ R V + +I LC V
Sbjct: 172 DFLRTNFYRLFVIYCALGFGITRTVPKYLMIKGISIVIALCSV 214
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 518 SRVAARTLATPQPLSMSSIYRFG*RSTFLKLS 423
++V+ RTL+ P+PL++ +Y ST LK++
Sbjct: 259 AKVSVRTLSRPEPLTIKKVY-----STLLKIA 285
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 458 DILRTSIMVVVSLVCVLPLGLLRNVDSLSNVSAATICFYLCLV 586
D LRT+ + + C L G+ R V + +I LC V
Sbjct: 172 DFLRTNFYRLFVIYCALGFGITRTVPKYLMIKGISIVIALCSV 214
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 458 DILRTSIMVVVSLVCVLPLGLLRNVDSLSNVSAATICFYLCLV 586
D LRT+ + + C L G+ R V + +I LC V
Sbjct: 144 DFLRTNFYRLFVIYCALGFGITRTVPKYLMIKGISIVIALCSV 186
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 458 DILRTSIMVVVSLVCVLPLGLLRNVDSLSNVSAATICFYLCLV 586
D LRT+ + + C L G+ R V + +I LC V
Sbjct: 172 DFLRTNFYRLFVIYCALGFGITRTVPKYLMIKGISIVIALCSV 214
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 163 HISHAVLLSTMWYIAGNINLANHGLSFETLLLFPFEI 273
H +H L+S+ A N +G +FE +LFP E+
Sbjct: 208 HGAHGYLISSTVSPATNDRNDKYGGTFEKRILFPMEV 244
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 356 GIIGFLMGTCIAYFVV 403
GI+G+L+ CIAY +V
Sbjct: 289 GIVGWLLNLCIAYTIV 304
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.6
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 389 AYFVVVG-DLGPQIISKMLNVNQSDILRTSIMVVVSLVC-VLPLGLLRNVDSLSNVSAAT 562
A+FVV G D GP IIS ++ + R + +V + C +L L + ++ V AT
Sbjct: 187 AFFVVSGADFGP-IISSLVTEHSDTAWRWPLWTIVIIECFILTLDVFLIKETFGPVILAT 245
Query: 563 ICFYLCLVVK 592
L L K
Sbjct: 246 KAKNLRLTTK 255
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 409 SDYHEVSYARSHQKSDNTDFNGHLPSRSEYVKR*KFKVSPSGQQSR 272
+D +E+S +++ D N H PSRS ++ +K + GQQ +
Sbjct: 609 ADDNEISKSKAQNAIDFNVTNTHSPSRSISSEK-SYKAAERGQQDK 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,168
Number of Sequences: 5004
Number of extensions: 60975
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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