Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m23f
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-4|AAL35731.2|  598|Caenorhabditis elegans Hypothetical ...   146   1e-35
Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2 prot...    29   4.7  
AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF025468-4|AAB71045.1|  449|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical p...    28   8.1  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    28   8.1  

>AC103567-4|AAL35731.2|  598|Caenorhabditis elegans Hypothetical
           protein Y51F10.4 protein.
          Length = 598

 Score =  146 bits (355), Expect = 1e-35
 Identities = 68/203 (33%), Positives = 116/203 (57%), Gaps = 1/203 (0%)
 Frame = +2

Query: 137 LANSIIGVGILAMPYCFQQCXXXXXXXXXXXXXXVSRLCCYFLLKSALLARRRNFEFLAF 316
           LAN IIGV +LAMPY FQQC              +++L C+FL  +A   R  ++E LA 
Sbjct: 58  LANCIIGVSVLAMPYVFQQCGILLAAIMIALCAVLTKLTCHFLAHAAFNTRTTSYESLAM 117

Query: 317 HVFGPAGKMAVEIGIIGFLMGTCIAYFVVVGDLGPQIISKMLNVN-QSDILRTSIMVVVS 493
              GP+G+  VE+ ++ +L+ + +A+ VV+GD+GP ++++ L +   +  LR  +M+VV 
Sbjct: 118 ATLGPSGRRFVELCLLVYLVSSIVAFIVVIGDIGPHLVAEFLELEAPTQRLRILVMIVVV 177

Query: 494 LVCVLPLGLLRNVDSLSNVSAATICFYLCLVVKVITEATSQLFEEELQNRMELWKPSGVL 673
           +  +LPL  + ++   S +S+    FY     +++ E+   +++ E    +  W+P G L
Sbjct: 178 VFIILPLSFIDDLKKFSVISSVACLFYFLFAGRMMLESLPTIYDGEWSIHVVWWRPQGFL 237

Query: 674 QCVPIFSMALFCQTQLFEIFESL 742
            C+PI  MA+ CQTQLF +   +
Sbjct: 238 TCLPIVCMAMCCQTQLFPVLSCI 260


>Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical
           protein C56A3.7 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 547 VTETVDVTEQAEWQHAH*RHHNHYRCPQYIALVNVQHF*N-YLRP*ISDYHEVSYARSHQ 371
           +T+ +D  +     H H  HH H    QY  +  V+     + R  ++        RSH 
Sbjct: 29  LTDAMDKEDHHHHHHHHEHHHQHQGIAQYDTVEEVETLETVHHRTSLNQEVPTPQRRSHP 88

Query: 370 KSDNTD 353
           + DN D
Sbjct: 89  QYDNLD 94


>U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2
           protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 547 VTETVDVTEQAEWQHAH*RHHNHYRCPQYIALVNVQHF*N-YLRP*ISDYHEVSYARSHQ 371
           +T+ +D  +     H H  HH H    QY  +  V+     + R  ++        RSH 
Sbjct: 29  LTDAMDKEDHHHHHHHHEHHHQHQGIAQYDTVEEVETLETVHHRTSLNQEVPTPQRRSHP 88

Query: 370 KSDNTD 353
           + DN D
Sbjct: 89  QYDNLD 94


>AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical
           protein Y43F4B.7 protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/87 (22%), Positives = 39/87 (44%)
 Frame = +2

Query: 338 KMAVEIGIIGFLMGTCIAYFVVVGDLGPQIISKMLNVNQSDILRTSIMVVVSLVCVLPLG 517
           K  V + +    +G C  YFV + D     +    N N S  L  ++ +++ L+ +L + 
Sbjct: 141 KQLVNVNMFISQLGFCCVYFVFMAD----NLEDFFNNNTSIHLSKAVWMLLLLIPMLSIC 196

Query: 518 LLRNVDSLSNVSAATICFYLCLVVKVI 598
            +R +  L+  + A    Y+  V  V+
Sbjct: 197 SIRRLSILAPFAMAANVVYVVAVAVVL 223


>AF025468-4|AAB71045.1|  449|Caenorhabditis elegans Hypothetical
           protein T27A1.5 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +2

Query: 338 KMAVEIGIIGFLMGTCIAYFVVVGDLGPQIISKMLNVNQSDILRTSIMVV-VSLVCVLPL 514
           K  V I +     G C  YFV + D   Q   +  +++ S     +++++ +S +C    
Sbjct: 131 KQMVNINMFVAQFGFCCVYFVFMADNLKQFFDQTSSIHISQAGWIALLLIPISALCT--- 187

Query: 515 GLLRNVDSLSNVSAATICFYLCLVVKVITEATS 613
             +R + +L+ ++A     Y+  VV V+ +  S
Sbjct: 188 --IRELKALAPLAAVANFVYIIAVVIVLADLFS 218


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 710 DKTAPSRISG-RTEAPRTASTAPYDSVIPLRTTVT 609
           D T PS   G  T  P   S APYD   P  TTVT
Sbjct: 290 DFTFPSNAPGVDTTLPIEGSPAPYDDCAPPVTTVT 324


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 710 DKTAPSRISG-RTEAPRTASTAPYDSVIPLRTTVT 609
           D T PS   G  T  P   S APYD   P  TTVT
Sbjct: 290 DFTFPSNAPGVDTTLPIEGSPAPYDDCAPPVTTVT 324


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 710 DKTAPSRISG-RTEAPRTASTAPYDSVIPLRTTVT 609
           D T PS   G  T  P   S APYD   P  TTVT
Sbjct: 290 DFTFPSNAPGVDTTLPIEGSPAPYDDCAPPVTTVT 324


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 710 DKTAPSRISG-RTEAPRTASTAPYDSVIPLRTTVT 609
           D T PS   G  T  P   S APYD   P  TTVT
Sbjct: 290 DFTFPSNAPGVDTTLPIEGSPAPYDDCAPPVTTVT 324


>Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 574 SLSRREGDNGSDVTVVRRGITESYGAVEAVRGASV 678
           S+S   GD G ++ +   G+ ESYG   A   ASV
Sbjct: 74  SVSGIVGDRGLNLLINNAGLIESYGTTSAPNRASV 108


>Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 574 SLSRREGDNGSDVTVVRRGITESYGAVEAVRGASV 678
           S+S   GD G ++ +   G+ ESYG   A   ASV
Sbjct: 74  SVSGIVGDRGLNLLINNAGLIESYGTTSAPNRASV 108


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +2

Query: 542 SNVSAATICFYL---CLVVKVITEATSQLFEEELQNRMELWKPSGVLQCVPIF 691
           +++SA +IC +L   C+++K + + +S + ++    ++EL +   +   +PIF
Sbjct: 205 TSISAISICMFLMLACMIMKKLNKMSSCMSKKTSTLQLELLRALIIQTVIPIF 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,431,631
Number of Sequences: 27780
Number of extensions: 337373
Number of successful extensions: 905
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)