Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17m17f
(1144 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 2.1
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 28 2.1
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 4.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 4.9
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 6.4
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 6.4
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.5
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 8.5
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.3 bits (60), Expect = 2.1
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Frame = -3
Query: 686 TKGTDTDDNPVVE-QRASGVTTTL-SESSNAESTNTQHVGSDSGPVTSSTQILVYS---- 525
T GT+T E Q +G T T +E+ T TQ + T++T++ +
Sbjct: 1319 TAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQATTATETQATTATEVQTTTGATG 1378
Query: 524 ---IDLDMTKLFRVRATKR-HGSPSSGPYDLVISKIVVGTSNPG 405
+ +T V+ T + SSG Y ++S VV T PG
Sbjct: 1379 TAGTETQVTTATEVQPTTAVTETSSSGYYTTIVSSTVVSTVVPG 1422
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 713 GVVAITTSYT--KGTDTDDNPVVEQRASGVTTTLSESSNAESTNTQHVGSDSGPV 555
G V TT+ G+ + VVE VTTTL S A +T GS SG V
Sbjct: 264 GSVEYTTTLVPASGSVSGTVEVVEPAVGTVTTTLQSGSQAFTTTVPASGSVSGTV 318
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 27.1 bits (57), Expect = 4.9
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 791 SSGYRSMVTTEPPVISLLIGWYR-LTVGVVAITTSYTKGTDTDDNPVVEQRASGVTTTLS 615
SSG ++T PV Y LT G + T + T TDT + VV + ++ TT
Sbjct: 58 SSGSSHYISTIYPVNKTHHTEYTTLTDGSID-TYTITAKTDTGTDVVVVETSANTITTTL 116
Query: 614 ESSNAESTNTQHVGSDSGPVT 552
S + E T T + + P T
Sbjct: 117 YSGSLEFTTTLDSANGTTPAT 137
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = -3
Query: 698 TTSYTKGTDTDDNPVVEQRASGVTTTLSESSNAESTNTQHVGSDSGPVTSST 543
++S + + + + +S +++ S SS++ S+++ S S P+TSST
Sbjct: 163 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = -3
Query: 707 VAITTSYTKGTDTDDNPVVEQRASGVTTTLSESSNAESTNTQHVGSDSGPVTSSTQILVY 528
V+ +SY + + + E + ++TLSES ++ +TN+ V +S +S+T L
Sbjct: 936 VSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTS 995
Query: 527 S 525
S
Sbjct: 996 S 996
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.6 bits (56), Expect = 6.4
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Frame = -3
Query: 662 NPVVEQRASG-VTTTLSESSNAESTNTQHVGSDSGPVTSSTQILVYSIDLDMTKLFRVRA 486
+P+V SG T+ +S ++ +TN V V + +QI D T VRA
Sbjct: 758 SPLVSSSPSGSFTSQISPAATTTATNLDAVSLSPSTVRTGSQISDIGNDAISTTRKTVRA 817
Query: 485 TKRHGSPSSGPYDLVISKIVVGTSNPGRSHGVVDVNDLS*N 363
+ +P S D NP + V+VN+ S N
Sbjct: 818 FLENANPYSTNND----------GNPSNNTSDVEVNETSMN 848
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 6.4
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 713 GVVAITTSY-TKGTDTDDNPVVEQRASGVTTTLSESSNAESTNTQHVGSDSGPVTSSTQI 537
G V TT+Y +GT + +VE A VT T S S++ +T V + SG T +
Sbjct: 767 GSVGYTTTYPVQGTVSGTVMIVEPTAGYVTVTTSLGSSSYATT---VATASGTSTGTVLQ 823
Query: 536 LVYSI 522
+V S+
Sbjct: 824 VVPSL 828
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 8.5
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Frame = -3
Query: 839 HP*THWTPSLVISVAASSGYRSMVTTEPPVISLLIGW---YRLTVGVVAITTSYTKGTDT 669
+P + T S+ S + S +V+T V I Y T+ IT+ + +
Sbjct: 63 YPESTSTKSITTSTQSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSGTVEIVEP 122
Query: 668 DDNPVVEQRASGV---TTTLSESSNAESTNTQHVGSDSGPVT 552
V E SG TTTL+++S S + V + P T
Sbjct: 123 TAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKNNPTT 164
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -3
Query: 848 ELPHP*THWTPSLVISVAASSGYRSMVTTEPPVISLLIGWYRLTV--GVVAITTSYTKGT 675
ELP P +PSL ++ SS T+ P ++S + + T+ +TS K T
Sbjct: 3793 ELPTPSRMTSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNSFTTASTSIMKTT 3852
Query: 674 DTDDN 660
+ N
Sbjct: 3853 SLNSN 3857
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 8.5
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Frame = -3
Query: 839 HP*THWTPSLVISVAASSGYRSMVTTEPPVISLLIGW---YRLTVGVVAITTSYTKGTDT 669
+P + T S+ S + S +V+T V I Y T+ IT+ + +
Sbjct: 63 YPESTSTKSITTSTQSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSGTVEIVEP 122
Query: 668 DDNPVVEQRASGV---TTTLSESSNAESTNTQHVGSDSGPVT 552
V E SG TTTL+++S S + V + P T
Sbjct: 123 TAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKNNPTT 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,438,655
Number of Sequences: 5004
Number of extensions: 93592
Number of successful extensions: 333
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -