Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m17f
         (1144 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    31   1.3  
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    30   3.0  
09_06_0370 - 22610441-22610569,22610659-22611060,22611141-226111...    29   9.1  
09_06_0197 - 21494520-21494807,21494871-21495018,21495342-21495394     29   9.1  
01_03_0172 + 13425443-13426192                                         29   9.1  

>01_06_1312 -
           36205549-36206649,36207558-36207883,36209083-36209198,
           36210472-36211577
          Length = 882

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 456 ATGWGSMSLGGAYSEQLRHVQIYTVNQDLCRARHRTTITANMLCVGRLGVAGF 614
           ATGW +  LG AY+E L+H+   T  +++      T    +   V R  VA F
Sbjct: 193 ATGWTAGLLGYAYAEHLQHIGKETTAKNMAPPTFLTEEEESSFKVHRRSVAAF 245


>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = -2

Query: 699 HHILHQRNRHRRQPRCGTEGFRSHHHTVRIQQRRVYQHTTCWQ 571
           HH  H  N  RRQ R G  G   HHH    Q    +QH   WQ
Sbjct: 43  HHHHHHANP-RRQHRGGGGG-AYHHHQQHYQPHHHHQHHQHWQ 83


>09_06_0370 -
           22610441-22610569,22610659-22611060,22611141-22611191,
           22611475-22611700,22612219-22612289,22612411-22612530,
           22612618-22612812,22612995-22613059,22613306-22613396,
           22613611-22613672,22613796-22613846,22614326-22614427,
           22614876-22614939,22615104-22615247
          Length = 590

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 72  TNQQRIIGGSVVTIDRYPEVAATLVSSNGIQWLQGCGSSILNNRAVLTAAHC 227
           TN+    G   VT+DRY +     ++SN  Q+++  G  +L ++      HC
Sbjct: 477 TNESNGSGSGSVTVDRYGDGHYRNIASNVSQYIKMVGDQLL-HKIPKAVVHC 527


>09_06_0197 - 21494520-21494807,21494871-21495018,21495342-21495394
          Length = 162

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 485 TKRHGSPSSGPYDLVISKIVVGTSNP 408
           T+RHG  S GP  +++S ++ G S P
Sbjct: 99  TRRHGRISHGPMGMLLSFLIPGISKP 124


>01_03_0172 + 13425443-13426192
          Length = 249

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 710 VVAITTSYTKGTDTDDNPVVEQRASGVTTTLSESSNAESTNTQHVGS 570
           VV IT +    TD DD  + E+   G+    S SSN      +  G+
Sbjct: 47  VVMITAASMDRTDGDDRTMKEEETDGIAIARSASSNGSRQQDKKRGA 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,440,402
Number of Sequences: 37544
Number of extensions: 707132
Number of successful extensions: 2064
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3468127212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)