Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17m17f
(1144 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 62 9e-10
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 58 2e-08
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 38 0.010
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 32 0.87
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 32 0.87
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 2.7
AC024800-5|AAF60724.1| 966|Caenorhabditis elegans Hypothetical ... 30 3.5
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 29 4.6
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 29 4.6
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr... 29 8.1
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p... 29 8.1
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 29 8.1
U42438-1|AAN84876.1| 459|Caenorhabditis elegans Maternal effect... 29 8.1
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 29 8.1
AF016224-1|AAC27121.1| 459|Caenorhabditis elegans WD-40 repeat ... 29 8.1
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 61.7 bits (143), Expect = 9e-10
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 10/205 (4%)
Frame = +3
Query: 60 NAVPTNQQRIIGGSVVTIDRYPEVAATLVSSNGIQWLQGCGSSILNNRAVLTAAHCIYGV 239
+A + R++GG +P AA N CG+SIL+ ++TAAHC
Sbjct: 18 DAAKSRIARVVGGFETVPGAFPWTAAL---RNKATKAHHCGASILDKTHLITAAHCFEED 74
Query: 240 MRIR-----VGSAFGNS---GGRVHQVSRYIPHPNYVAATFESDVAILHVSTQIVYVNNA 395
R+ VG N ++ + R +P Y F D+AIL + + N
Sbjct: 75 ERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIPYPGIEFNEY 133
Query: 396 VRPARIAGSNYNLADNQVVWATGWGSMSLGGAYSEQLRHVQIYTVNQDLC--RARHRTTI 569
+P + ++ + +GWGSM L Y+E+L+ I +N+ C ++ +++
Sbjct: 134 AQPICLPSKDFVYTPGRQCVVSGWGSMGL--RYAERLQAALIPIINRFDCVNSSQIYSSM 191
Query: 570 TANMLCVGRLGVAGFGQCGGDSGSP 644
+ + C G L G C GDSG P
Sbjct: 192 SRSAFCAGYL-EGGIDSCQGDSGGP 215
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 57.6 bits (133), Expect = 2e-08
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 10/202 (4%)
Frame = +3
Query: 72 TNQQRIIGGSVVTIDRYPEVAATLVSSNGIQWLQGCGSSILNNRAVLTAAHCIYGVMR-- 245
T R+IGGS + +P L+S G CG S+++ VLTAAHC R
Sbjct: 53 TLDHRLIGGSESSPHSWPWTVQ-LLSRLGHH---RCGGSLIDPNFVLTAAHCFAKDRRPT 108
Query: 246 ---IRVGSAFGNSGGRVHQVSRYIPHPNY-VAATFESDVAILHVSTQIVYVNNAVRPARI 413
+RVG SG H+V+ HP Y + D AI+ + VN + I
Sbjct: 109 SYSVRVGGHRSGSGS-PHRVTAVSIHPWYNIGFPSSYDFAIMRIHPP---VNTSTTARPI 164
Query: 414 AGSNYNLADNQVVWATGWGSMSLGGAYS-EQLRHVQIYTVNQDLCRARHR---TTITANM 581
+ +N++ TGWGS G + S LR + + ++ C + +M
Sbjct: 165 CLPSLPAVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSM 224
Query: 582 LCVGRLGVAGFGQCGGDSGSPL 647
LC G C GDSG PL
Sbjct: 225 LCAG-YSYGKIDSCQGDSGGPL 245
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.010
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 16/204 (7%)
Frame = +3
Query: 84 RIIGGSVVTIDRYPEVAATLVS--SNGIQWLQGCGSSILNNRAVLTAAHCIYGVMR---I 248
RIIGG+ +ID A LVS NG L CG++++++ ++TAAHC + +
Sbjct: 37 RIIGGN--SIDDGANWMAKLVSYGDNGQGIL--CGATVIDDFWLVTAAHCALQLQTRSFV 92
Query: 249 RVGSAFGNSGGRVHQVSRYIPHPNYVAATFESDVAILHVSTQIVYVNNAVRPARIAGSNY 428
V N+ R V H Y T ++D+A+L +S+ + + ++P + +
Sbjct: 93 YVREP-KNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLSKL--GIKPVCLVHDDS 149
Query: 429 NLA---DNQVVWATG--WGSMSLGG---AYSEQLRHVQIYTVNQDLCRARHRTTITANML 584
L N VV G G S G S+ L+ + ++ D C R ++
Sbjct: 150 KLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVK 209
Query: 585 CVGRLGVAG---FGQCGGDSGSPL 647
G AG G GDSG PL
Sbjct: 210 ITGYQICAGAYLHGTAPGDSGGPL 233
Score = 29.5 bits (63), Expect = 4.6
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 727 YQPISS-EITGGSVVTIDRYPELAATLIT-SDGVQWVQGCGSSILNNKAVLTAAHCLIR 897
Y+PI S I GG+ +ID A L++ D Q + CG++++++ ++TAAHC ++
Sbjct: 30 YKPIFSFRIIGGN--SIDDGANWMAKLVSYGDNGQGIL-CGATVIDDFWLVTAAHCALQ 85
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 31.9 bits (69), Expect = 0.87
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = -3
Query: 686 TKGTDTDDNPVVEQRASGVTTTLSESSNAESTNTQHVGSDSGPVTSSTQILVYSIDLDMT 507
T + + + PV E+ S +T+ +S+A ++N+ S P +S Y ++
Sbjct: 500 TPRSSSQNAPVQEEATSHQSTSSEPASSAPNSNSSPNSSGMSPAVTS-----YLSNISEP 554
Query: 506 KLFRVRATKRHGSPSS 459
F R T+RH PS+
Sbjct: 555 FTFSARITRRHAPPST 570
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 31.9 bits (69), Expect = 0.87
Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Frame = -3
Query: 821 TPSLVISVAASSGYRSMVTTEPPVISLLIGWYRLTVGVVAITTSYTKGTDTDDNP----- 657
T S V + SS +T+P + S T G +TT + T T+ N
Sbjct: 857 TGSTVTNPPVSSSTSGSSSTQP-IASSTANPGSSTSGTTVVTTQGSSSTQTNPNTGSTGS 915
Query: 656 VVEQRASGVTTTLSESSN--AESTNTQHVGSDSGPVTSSTQILVYSIDLDMTKLFRVRAT 483
V Q ++ +T+ S S+ A ST S SGP +STQ + T V T
Sbjct: 916 TVTQPSAFSSTSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGSTTVATT 975
Query: 482 KRHGSPSSG 456
GS + G
Sbjct: 976 VTQGSSTEG 984
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 30.3 bits (65), Expect = 2.7
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Frame = -3
Query: 821 TPSLVISVAASSGYRSMVTTEPPVISLLIGWYRLTVGVVAITTS-YTKGTDTDDNPVVEQ 645
T LV + S +M +T + I + T S T G+ + NP +
Sbjct: 1911 TAGLVSTSTVPSSTGTMGSTSSGTVGSTISESSTAASTSSQTGSTVTIGSTSGTNPSSPR 1970
Query: 644 RASGVTTTLSESSNAESTNTQHVGSDSGPVTSS 546
S +T T S S + EST T S P T S
Sbjct: 1971 SLSQITITPSPSQSTESTQTSLPSSSPSPSTHS 2003
>AC024800-5|AAF60724.1| 966|Caenorhabditis elegans Hypothetical
protein Y49F6A.1 protein.
Length = 966
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 717 RGGGSYHHILHQRNRHRRQPRCGTEGFRSHHH 622
RGG SY H +R+R R G G R +HH
Sbjct: 278 RGGRSYGHDNRRRSRSRSPQDRGDRGDRGNHH 309
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 335 GRSHVIRMRNVSAHLMYPTATVAECRT 255
G+SH+ RM + ++ YPTAT+ RT
Sbjct: 329 GQSHIPRMMTMPPNMPYPTATLPHPRT 355
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 335 GRSHVIRMRNVSAHLMYPTATVAECRT 255
G+SH+ RM + ++ YPTAT+ RT
Sbjct: 235 GQSHIPRMMTMPPNMPYPTATLPHPRT 261
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 335 GRSHVIRMRNVSAHLMYPTATVAECRT 255
G+SH+ RM + ++ YPTAT+ RT
Sbjct: 329 GQSHIPRMMTMPPNMPYPTATLPHPRT 355
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 335 GRSHVIRMRNVSAHLMYPTATVAECRT 255
G+SH+ RM + ++ YPTAT+ RT
Sbjct: 235 GQSHIPRMMTMPPNMPYPTATLPHPRT 261
>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 28.7 bits (61), Expect = 8.1
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +3
Query: 237 VMRIRVGSAFGNSGGRVHQVSRYIPHPNYVAATFESDVAILHVSTQIVYVNNAVRPARIA 416
V ++ +A + GGR V P P A +SD I+ V+ + V V+N R + IA
Sbjct: 209 VQKVATSTAINDIGGREEIVDESFPAPRTTAKQDDSD--IIEVTPEKV-VSNEKRKSGIA 265
Query: 417 GSNYNLADNQVVWAT 461
NL D+ ++ T
Sbjct: 266 ---INLDDSDIIDVT 277
>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 28.7 bits (61), Expect = 8.1
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +3
Query: 237 VMRIRVGSAFGNSGGRVHQVSRYIPHPNYVAATFESDVAILHVSTQIVYVNNAVRPARIA 416
V ++ +A + GGR V P P A +SD I+ V+ + V V+N R + IA
Sbjct: 209 VQKVATSTAINDIGGREEIVDESFPAPRTTAKQDDSD--IIEVTPEKV-VSNEKRKSGIA 265
Query: 417 GSNYNLADNQVVWAT 461
NL D+ ++ T
Sbjct: 266 ---INLDDSDIIDVT 277
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 28.7 bits (61), Expect = 8.1
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -3
Query: 665 DNPVVEQRASGVTTTLSESSNAESTNTQHVGSDSGPVTSSTQILVYSIDLDMTKLFR-VR 489
D+ + QRA ++ S SSN S+ + + S PV + + + D + +F V
Sbjct: 1289 DDDLPSQRAVSPASSTSSSSNRSSSGSSYTSSSKRPVNAVGPLPLNKNVEDQSPIFHTVM 1348
Query: 488 ATKRHGSPSSGPYDLVISKIVVGTSNP 408
K S+ +D +++ + TS P
Sbjct: 1349 RKKTKVRRSNSEHDTIMNVGIPMTSVP 1375
>U42438-1|AAN84876.1| 459|Caenorhabditis elegans Maternal effect
sterile protein 6 protein.
Length = 459
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 47 YWLGKCCTNESAADYWRFG 103
Y L K C NE A +WRFG
Sbjct: 321 YALSKGCGNEKAIHFWRFG 339
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
F35H10.10 protein.
Length = 1404
Score = 28.7 bits (61), Expect = 8.1
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -3
Query: 665 DNPVVEQRASGVTTTLSESSNAESTNTQHVGSDSGPVTSSTQILVYSIDLDMTKLFR-VR 489
D+ + QRA ++ S SSN S+ + + S PV + + + D + +F V
Sbjct: 1289 DDDLPSQRAVSPASSTSSSSNRSSSGSSYTSSSKRPVNAVGPLPLNKNVEDQSPIFHTVM 1348
Query: 488 ATKRHGSPSSGPYDLVISKIVVGTSNP 408
K S+ +D +++ + TS P
Sbjct: 1349 RKKTKVRRSNSEHDTIMNVGIPMTSVP 1375
>AF016224-1|AAC27121.1| 459|Caenorhabditis elegans WD-40 repeat
protein protein.
Length = 459
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 47 YWLGKCCTNESAADYWRFG 103
Y L K C NE A +WRFG
Sbjct: 321 YALSKGCGNEKAIHFWRFG 339
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,282,947
Number of Sequences: 27780
Number of extensions: 563343
Number of successful extensions: 1673
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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