Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m17f
         (1144 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    56   8e-10
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 55.6 bits (128), Expect = 8e-10
 Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 15/206 (7%)
 Frame = +3

Query: 75  NQQRIIGGSVVTIDRYPEVAATLVSSNGIQWLQGCGSSILNNRAVLTAAHCIYG----VM 242
           N  RI+GG+   I+ +P +A         +    CG++I++ R VLTAAHCI       +
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGI---KRTYEPGMICGATIISKRYVLTAAHCIIDENTTKL 213

Query: 243 RIRVG-----SAFGNSGGRVHQVSRYIPHPNYVAATFE----SDVAILHVSTQIVYVNNA 395
            I VG     S    +   +H +++ I HP Y     +    +D+A+L     I +  + 
Sbjct: 214 AIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKF-GDK 272

Query: 396 VRPARIAGSNY--NLADNQVVWATGWGSMSLGGAYSEQLRHVQIYTVNQDLCRARHRTTI 569
           V PA +   ++  + A + V    GWG  S  G  S  L+   +  + Q  C  ++   I
Sbjct: 273 VGPACLPFQHFLDSFAGSDVT-VLGWGHTSFNGMLSHILQKTTLNMLTQVEC-YKYYGNI 330

Query: 570 TANMLCVGRLGVAGFGQCGGDSGSPL 647
             N +C       G   C  DSG P+
Sbjct: 331 MVNAMCA---YAKGKDACQMDSGGPV 353



 Score = 35.9 bits (79), Expect = 7e-04
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +1

Query: 742 SEITGGSVVTIDRYPELAATLITSDGVQWVQGCGSSILNNKAVLTAAHCLI 894
           S I GG+   I+ +P +A    T +       CG++I++ + VLTAAHC+I
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI---CGATIISKRYVLTAAHCII 206


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = -2

Query: 708 GSYHHILHQRNRHRRQPRCGTEGFRSHHHTVRIQQRRVYQHTT 580
           GS  H  HQ   H   P  G      HH T  +Q     Q  T
Sbjct: 331 GSSPH--HQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPT 371


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 467 GIHVAWWRVLGTASSCPNL 523
           G+  AW   LGTASS   L
Sbjct: 349 GMMQAWMTALGTASSAATL 367


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 818 PSLVISVAASSGYRSMVTTEPPVISLLIGWYR 723
           P L + +  ++ +R  V+T P      I WY+
Sbjct: 338 PLLSVHLGGNAEFRCEVSTHPQAGPHFITWYK 369


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 818 PSLVISVAASSGYRSMVTTEPPVISLLIGWYR 723
           P L + +  ++ +R  V+T P      I WY+
Sbjct: 338 PLLSVHLGGNAEFRCEVSTHPQAGPHFITWYK 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,962
Number of Sequences: 438
Number of extensions: 6595
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38680821
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)