Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m04r
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.5  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 450 VLKIAKGFELHITNYNLALNSIGTQKYRYANIEPAKIQLVHVIDTINIKVL---KALGVY 620
           + KI K     IT Y + +  I  QK     I     Q++H++ T   KV      L  Y
Sbjct: 62  IFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHILWTSYKKVFMKDNILRQY 121

Query: 621 WILF 632
           +I F
Sbjct: 122 FITF 125


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 450 VLKIAKGFELHITNYNLALNSIGTQKYRYANIEPAKIQLVHVIDTINIKVL---KALGVY 620
           + KI K     IT Y + +  I  QK     I     Q++H++ T   KV      L  Y
Sbjct: 45  IFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHILWTSYKKVFMKDNILRQY 104

Query: 621 WILF 632
           +I F
Sbjct: 105 FITF 108


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 490 FVMWSSKPLAIFKTKLLDVSNIPK 419
           F  WS++P  +FK +  D+ ++ K
Sbjct: 671 FGSWSNRPNLLFKDEAKDLVSVNK 694


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 490 FVMWSSKPLAIFKTKLLDVSNIPK 419
           F  WS++P  +FK +  D+ ++ K
Sbjct: 671 FGSWSNRPNLLFKDEAKDLVSVNK 694


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 490 FVMWSSKPLAIFKTKLLDVSNIPK 419
           F  WS++P  +FK +  D+ ++ K
Sbjct: 671 FGSWSNRPNLLFKDEAKDLVSVNK 694


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 251 NSIHIHYSVVHLSLSEGQEGSFRL 322
           N++HI YSV  L + E    + RL
Sbjct: 14  NTLHIIYSVAGLKIFEANPDTKRL 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,172
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)