Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17m04f
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 81 7e-16
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 81 7e-16
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81458-3|CAB03823.2| 487|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF251126-1|AAF71273.1| 487|Caenorhabditis elegans UDP-GlcNAc:a-... 29 2.8
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 29 3.7
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 29 3.7
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 29 3.7
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 29 4.9
Z47812-9|CAA87794.2| 377|Caenorhabditis elegans Hypothetical pr... 28 6.5
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 6.5
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 6.5
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 6.5
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 6.5
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 6.5
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 28 8.6
U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical p... 28 8.6
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 28 8.6
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 8.6
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 28 8.6
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 28 8.6
AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical ... 28 8.6
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 81.4 bits (192), Expect = 7e-16
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +1
Query: 508 SAGRHNNWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLALNIVGGM- 684
+A R +NWPPLP PI+PCFYQDI V+IP++FQ+ V Y++++ Y L L +N++ +
Sbjct: 112 NAPRPHNWPPLPTIIPIEPCFYQDIEVEIPVQFQKTVTFAYYVFLMYVLALVVNVLASLF 171
Query: 685 XXXXXXXXXXXXXXXXXYFVLFTPFSFVCWYR 780
LF+P SF+ W+R
Sbjct: 172 YMIFAGGSIGQLFLACIQLALFSPCSFLFWFR 203
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 166 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 279
DNPF+DP P + ++ T+ T ED+NPF
Sbjct: 3 DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPF 40
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 81.4 bits (192), Expect = 7e-16
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +1
Query: 508 SAGRHNNWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLALNIVGGM- 684
+A R +NWPPLP PI+PCFYQDI V+IP++FQ+ V Y++++ Y L L +N++ +
Sbjct: 112 NAPRPHNWPPLPTIIPIEPCFYQDIEVEIPVQFQKTVTFAYYVFLMYVLALVVNVLASLF 171
Query: 685 XXXXXXXXXXXXXXXXXYFVLFTPFSFVCWYR 780
LF+P SF+ W+R
Sbjct: 172 YMIFAGGSIGQLFLACIQLALFSPCSFLFWFR 203
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 166 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 279
DNPF+DP P + ++ T+ T ED+NPF
Sbjct: 3 DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPF 40
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 640 STNGIDDGRSSGTRVVCRR*YPGRSTAVWDRSPGGAASYCGDP-PTPRGVPLPAAPTPRP 464
S+ G D G SSG Y G S++ + S GG + +P P P P +
Sbjct: 412 SSGGGDAGASSGGESSSAGGYSGSSSSGGEASSGGYSGGSSEPAPAPEAAPASSGGYSGG 471
Query: 463 SVLAPLAA 440
S AP AA
Sbjct: 472 SEAAPEAA 479
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 640 STNGIDDGRSSGTRVVCRR*YPGRSTAVWDRSPGGAASYCGDP-PTPRGVPLPAAPTPRP 464
S+ G D G SSG Y G S++ + S GG + +P P P P +
Sbjct: 412 SSGGGDAGASSGGESSSAGGYSGSSSSGGEASSGGYSGGSSEPAPAPEAAPASSGGYSGG 471
Query: 463 SVLAPLAA 440
S AP AA
Sbjct: 472 SEAAPEAA 479
>Z81458-3|CAB03823.2| 487|Caenorhabditis elegans Hypothetical
protein C03E10.4 protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 215 DGSAKGLSMVGSLNGLSSNLDILN--KFRHYYLVFNVSPTQRKVLIISLQYFYTKNRQSK 42
D S KG +V S++ L+ N DILN KF V + Q + LQY R +K
Sbjct: 90 DMSLKGSEIVESVSFLNENFDILNAAKFGDLSTVKTILVIQVHDRPVYLQYLIESMRNTK 149
Query: 41 *DDRSLMMTKSD 6
+ +L++ D
Sbjct: 150 GIEDTLLVFSHD 161
>AF251126-1|AAF71273.1| 487|Caenorhabditis elegans
UDP-GlcNAc:a-6-D-mannoside
b1,2-N-acetylglucosaminyltransferase II protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 215 DGSAKGLSMVGSLNGLSSNLDILN--KFRHYYLVFNVSPTQRKVLIISLQYFYTKNRQSK 42
D S KG +V S++ L+ N DILN KF V + Q + LQY R +K
Sbjct: 90 DMSLKGSEIVESVSFLNENFDILNAAKFGDLSTVKTILVIQVHDRPVYLQYLIESMRNTK 149
Query: 41 *DDRSLMMTKSD 6
+ +L++ D
Sbjct: 150 GIEDTLLVFSHD 161
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 444 ARGARTEGRGVGAAGSGTPRGVGGSP 521
A GA +G G GA G P+G G+P
Sbjct: 172 APGAPGQGSGAGAPGPAGPKGASGAP 197
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 580 YPGRSTAVWDRSPGGAASYCGDPPTPRGVPLPAAPTPRP 464
YP ++ A +PG A G P TP+ P P+P
Sbjct: 283 YPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNPQP 321
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 580 YPGRSTAVWDRSPGGAASYCGDPPTPRGVPLPAAPTPRP 464
YP ++ A +PG A G P TP+ P P+P
Sbjct: 281 YPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNPQP 319
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = -3
Query: 770 HTKLNGVNRTKYSMERPKVVKPPPENSMDIPPTMFRAKTSA*NIHKWY 627
H + N +++ +++PKV+ PPP N + PT +R ++S H+++
Sbjct: 52 HVQHNHISQN--GIQQPKVILPPP-NPYNTAPTHYRRRSST-EAHRYH 95
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 514 PPTPRGVPLPAAPTPRPSVLAPLAASENQQL 422
PP+P P+P P P P +L P + Q L
Sbjct: 782 PPSPLTAPIPPPPPPPPPMLPPQQSQLAQSL 812
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 514 PPTPRGVPLPAAPTPRPSVLAPLAASENQQL 422
PP+P P+P P P P +L P + Q L
Sbjct: 681 PPSPLTAPIPPPPPPPPPMLPPQQSQLAQSL 711
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -1
Query: 580 YPGRSTAVW-DRSPGGAASYCGDPPTPRGVPLP-AAPTPRPSVLAPLAAS 437
YP + V D + GGAA P P P P AAP P P LA S
Sbjct: 85 YPTKKRRVARDYAEGGAAPTAPAEPVPAPAPEPEAAPAPAPVAEPALAPS 134
>Z47812-9|CAA87794.2| 377|Caenorhabditis elegans Hypothetical
protein T05H10.8 protein.
Length = 377
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 31 LSSYFDCLFLV*KYCREIIKTFLCVGDTLKTK**CRNLLRMSKFEDNP 174
+++Y FLV ++C E+ K F D LK K L R++++ED+P
Sbjct: 64 VANYVQNRFLVTEFCPELAKLF----DVLKVKSLEELLQRLTEWEDDP 107
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 618 PSSIPFVDVLRARLSSEHSRRDVHTVLGRWLHDLRPLHTV 737
P + F+D +R L S+H RD+ V LH + +H +
Sbjct: 1134 PHVVDFIDSMRVNLESDHD-RDITVVTKLRLHFAKLIHLI 1172
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 618 PSSIPFVDVLRARLSSEHSRRDVHTVLGRWLHDLRPLHTV 737
P + F+D +R L S+H RD+ V LH + +H +
Sbjct: 1134 PHVVDFIDSMRVNLESDHD-RDITVVTKLRLHFAKLIHLI 1172
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 511 PTPRGVPLPAAPTPRPSVLAPL 446
PT R P+PA+P PRP P+
Sbjct: 98 PTIRPPPIPASPPPRPPASEPV 119
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 511 PTPRGVPLPAAPTPRPSVLAPL 446
PT R P+PA+P PRP P+
Sbjct: 320 PTIRPPPIPASPPPRPPASEPV 341
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 450 GARTEGRGVGAAGSGTPRGVGGSPQ*LAAP 539
GA + G GVGA G+ P G GSP AP
Sbjct: 209 GAPSFGGGVGAPGAPGPAGDAGSPGQPGAP 238
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 523 CGDPPTPRGVPLPAAPTPRPSVLAPLA 443
C PP P P P P P+P+ + P++
Sbjct: 509 CNRPPLPPLPPPPPPPKPKPAPVQPIS 535
>U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical
protein T20D4.7 protein.
Length = 155
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 526 NW-PPLPGFCPIQPCFYQDINVDIPLEF 606
+W PP GF PI FY+++N + + F
Sbjct: 49 HWCPPCRGFTPILKDFYEEVNEEFEIVF 76
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 523 CGDPPTPRGVPLPAAPTPRPSVLAPLA 443
C PP P P P P P+P+ + P++
Sbjct: 509 CNRPPLPPLPPPPPPPKPKPAPVQPIS 535
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 535 AASYCGDPPTPRGVPLPAAPTPRPSVLAPLAAS 437
AA G PP RG P PAAP P + L A+
Sbjct: 39 AAPARGAPPAARGRPAPAAPANVPGLDPRLLAA 71
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 577 PGRS-TAVWDRSPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAAS 437
PG+ A D +PG A+YC P PR L A P+ AP AA+
Sbjct: 253 PGKDGDAGADGAPGTDAAYC--PCPPRSAALGAGGGAEPAGAAPEAAA 298
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 529 SYCGDPP--TPRGVPLPAAPTPRP-SVLAPLAA 440
+YC PP P P+ A P PRP V AP A
Sbjct: 184 TYCAVPPCPAPAATPVYAQPAPRPMPVYAPAPA 216
>AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical
protein Y71F9AL.9 protein.
Length = 314
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 514 PPTPRGVPLPAAPTPRPSVLAPLAAS 437
P T + P PA P P+V AP ++S
Sbjct: 86 PETTQSAPAPAKAAPAPTVAAPASSS 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,715
Number of Sequences: 27780
Number of extensions: 384495
Number of successful extensions: 2002
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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