Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m04f
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.4  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   9.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 520 GDPPTPRGVPLPAAPTPRPSVLAPLAA 440
           GD  TP   P PA P P PS   P +A
Sbjct: 333 GDSDTP---PKPAPPPPPPSSSGPDSA 356


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 299 INPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRLHQI 418
           I+P L+ S QH  Q+    +   ++ T D      R++ +
Sbjct: 196 IDPELTESEQHRLQNRLYTNDSTSSKTDDDSIDFDRMNSL 235


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 299 INPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRLHQI 418
           I+P L+ S QH  Q+    +   ++ T D      R++ +
Sbjct: 234 IDPELTESEQHRLQNRLYTNDSTSSKTDDDSIDFDRMNSL 273


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 215 DGSAKGLSMVGSLNGLSSNLDILNKFRHYY 126
           DG  + L +VG L G++S +  L +  + +
Sbjct: 729 DGKFQVLQLVGMLRGIASGMQYLAEMNYVH 758


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 166 DNPFSDPTI----DNPFADPSVQQVARSTNNATRGLED 267
           DNP S   +    +NPF+D   ++V+++  N+ + + D
Sbjct: 313 DNPESTGNLVYIYNNPFSDVEERRVSKTAMNSNQIVSD 350


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 505 PRGVPLPAAPTPRPSVLAPL 446
           PRG  LP   TP P+ +  L
Sbjct: 151 PRGGSLPTPVTPTPTTVQQL 170


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 701 PENSMDIPPTMFR 663
           PE++MD  PT FR
Sbjct: 23  PEDTMDYIPTRFR 35


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 468 RGVGAAGSGTPRGVGGSPQ*LAAPPGLLSHTAV 566
           R + A   G+   + GSP   AAPP L +  +V
Sbjct: 431 RELEAVNLGSACRIHGSPATTAAPPQLPTEESV 463


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 621 SSIPFVDVLRARLSSEHSRRDVHTVLGRWL 710
           S++PF  +  A L+++ +  D   ++ RW+
Sbjct: 308 STVPFNFMFIADLNNQSTASDFKQLIDRWV 337


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 176 LVTQP*TILLQTRRFSKLHGVQTMLHVV*KTTILSTANKMLIN 304
           L  +P  I+L         G+    H++   T   T+N  LIN
Sbjct: 462 LEKEPYVIILDDEHDDAFIGIVNQFHILQFITKNGTSNNYLIN 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,667
Number of Sequences: 438
Number of extensions: 5102
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)