Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m02r
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    71   3e-13
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    28   2.0  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    27   4.5  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   7.9  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
 Frame = -1

Query: 796 KPVYFMDAMMHAREWVTTPVTIYSVFXXXXXXXXXXXXXXXXXXXXXL--PIVNPDGYEF 623
           K V  +    HAREW+  P   Y+ +                     +  P++N DGYE+
Sbjct: 238 KKVIIIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEY 297

Query: 622 SHTDDRLWRRTRS-VNLEVSTTCFGVDPNRNFDVDFNTLGVSSDPCSQTYPGVAPFSEAE 446
           + ++DRLW + R  +N   ++ CFG++ + N+   FN    + DPCS  Y G++PF   E
Sbjct: 298 TWSNDRLWSKNRQPLN---NSECFGINLDANWAFGFNG---NIDPCSNEYGGLSPFQANE 351

Query: 445 TRIIRDIFLKYLPRIQL----YNDIHSHGNYVLFGF 350
           T  + ++  + L + Q     + D+HS+   VL+ +
Sbjct: 352 TMALFNLITESLSQEQKKVVGFLDVHSYSQSVLWPY 387


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 663  GSFCLLSIPMAMSSVTLTIVFGVAPVPST*KSVLPALESTRIGTLTST 520
            GS    +I     S T T+  G   +P T + +LPA  +   GT+ +T
Sbjct: 937  GSTVTSTIYSGSESFTTTLAVGSGTIPGTVEVILPAPTTIYTGTVATT 984


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 116 FFHRSHQRGDLEGNR----HFCSNFKDSLPQQSWSIMRY 12
           +FH S++ GDL  N      F  N  +S P+Q +  +++
Sbjct: 417 YFHNSNENGDLITNSLHGLDFLENANESFPEQMYPFIKH 455


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +2

Query: 728 VYRHWCRYPFTSVHHGVHKVYWFAGIL----EVCCRYLQNILMSRPSK 859
           +Y H    PF SV+  +H +YW    L      CC  L +  M+R  K
Sbjct: 160 LYGHPSGRPFRSVNDFLHHLYWLISDLTRNESTCCCVLCSGNMTRVRK 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,521,808
Number of Sequences: 5004
Number of extensions: 72427
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)