Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m02r
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.90 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 463 PFSEAETRIIRDIFLKYLPRI 401
           P +    ++IR IFLKYLP I
Sbjct: 325 PRTHRMPQLIRKIFLKYLPTI 345


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 845 TSKYFEDIDNKLRGSPQ-TSILYG 777
           +SK+ ED+ NKL  +P+  + LYG
Sbjct: 69  SSKFEEDLMNKLPTTPEYNNHLYG 92


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 584 GTGATPKTIVSVTELIAIGIDNRQNDP 664
           G G      + +T+L A+G+ N  +DP
Sbjct: 150 GVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 584 GTGATPKTIVSVTELIAIGIDNRQNDP 664
           G G      + +T+L A+G+ N  +DP
Sbjct: 150 GVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 584 GTGATPKTIVSVTELIAIGIDNRQNDP 664
           G G      + +T+L A+G+ N  +DP
Sbjct: 150 GVGRNVGYKIPITKLTAMGVLNNLHDP 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,566
Number of Sequences: 438
Number of extensions: 5554
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)