Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m02f
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    64   2e-11
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   2.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.9  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    27   2.9  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    26   5.1  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    26   6.8  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   9.0  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 19/245 (7%)
 Frame = +3

Query: 84  VFAGKHDIYSRHAVYGVELRDQDDVATLFNLQQKLNVDIWQHGMARV--RDAEVMVSPEQ 257
           ++A K   Y+   V  + L ++++++ +    Q  N+DIW +    V  R  E      +
Sbjct: 65  IWAEKIPDYNEEIVVRLHLEEENNLSDILQKAQSQNLDIWDYNFDHVDLRLKEENFDFWK 124

Query: 258 SKEFFETLDNNGLKYYLK--IEDVSKVLKEHEEDLAKWRRNRSNR--------MIFQDYP 407
           S+   + L NN  +   +  + D +      E  L        N         + F+ Y 
Sbjct: 125 SQYRSDILINNLTETLFESIVPDTTNSPFSTEAFLQAVENGHLNHEMFTSFTDIFFKSYQ 184

Query: 408 RYAEVNQYMEEIAARYPNLVTLVNAGKSFEGRDIKYLKIS----TTNFEDPR-KPVYFMD 572
               +N ++  +A+ Y +L  LV  G + EGR I  LK++    + N E  R K V  + 
Sbjct: 185 NLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKKVIIIQ 244

Query: 573 AMMHAREWVTTPVTIYSVFXXXXXXXXXXXXXXXXXXXXXX--PIVNPDGYEFSHTDDRL 746
              HAREW+  P   Y+ +                        P++N DGYE++ ++DRL
Sbjct: 245 GGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTWSNDRL 304

Query: 747 WRRTR 761
           W + R
Sbjct: 305 WSKNR 309


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 228 DAEVMVSPEQSKEFFETLDNNGLKYYLKIEDVSKVLKEHEEDLAK 362
           D    +S + +   F    N     YLK ED+S +LK+ +E L K
Sbjct: 230 DPNQTISNKSASSAFSLFSNLIGGKYLKEEDLSPILKQMQEHLTK 274


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 298  FKPLLSKVSKNSLDCSGETMTSASLTLAIPCCQISTFSFCWRLKRVA 158
            F+PL+ K + + + C    + S SLT  + C +++TF    +LK VA
Sbjct: 967  FEPLIFKCTASRI-CKVREIASLSLTCLLDCSKMTTF-IVSQLKGVA 1011


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 261 KEFFETLDNNGLKYYLKIEDVSKVLKE 341
           KEF ET  +NG+K  ++I + +K+ KE
Sbjct: 63  KEFKETTKSNGVKPEVEITESTKIQKE 89


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 598 THSRACIMASIKYTGLRGSSKFVVDIFKYLMSRPSKLFPALTRVTKFGYL 449
           THS   I+A + Y  +  S+ F++    ++ + P  L P   R   FGY+
Sbjct: 141 THSILDILAWVPYGVMHYSAPFIISFILFIFAPPGTL-PVWART--FGYM 187


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -2

Query: 219 WPYHAARYRRSVFAGD*RESPHHPGLEAQHRRQHVWSKYRVYRRTRSLLKRE 64
           W      +RR V +   R SP H   + +  R H++  Y      R+L+ R+
Sbjct: 9   WSSKDGEFRRQVSSFRERISPEHKYFQPEKDRYHLYVSYACPWAHRTLIVRK 60


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +3

Query: 228 DAEVMVSPEQSKEFFETLDNNGLKYYLKIEDVSKVLKEHEE------DLAKWRRNRSNRM 389
           D +V+  P   +   ++  N      LK   V K+L+  E        L++WR+N   RM
Sbjct: 257 DEDVLPLPVPLQSVMDSEHNENEPRALKRRKVQKLLEPDENIELSTRTLSQWRKNYVERM 316

Query: 390 IFQDYPRY 413
           I  +  +Y
Sbjct: 317 IALEATKY 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,333
Number of Sequences: 5004
Number of extensions: 64022
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)