Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17m02f
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0576 + 26346611-26346637,26346758-26346883,26347161-263472...    31   1.3  
07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048     29   5.4  
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814     29   5.4  
10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538     28   7.1  
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44...    28   7.1  
04_04_1679 + 35316170-35316628,35317064-35317219                       28   9.4  

>04_04_0576 +
           26346611-26346637,26346758-26346883,26347161-26347295,
           26348162-26348332
          Length = 152

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 595 HSRACIMASIKYTGLRGSSKFVVDIFKYLMSRPSKLFPAL 476
           H R C+  S  YT ++ S K  VD+ ++  S   K F AL
Sbjct: 68  HCRKCVCVSFYYTNIKSSLKLFVDLIEHKGSDCVKPFIAL 107


>07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048
          Length = 853

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = -3

Query: 443 NFFHVLVYLSVTRIILKDHSVTSVSPPFRQILFVLLQNFRNIFYFQ-----IILQAVII* 279
           NF   + Y+++T      + VTSV   F  +LF ++  FR IFY Q      +L  VI+ 
Sbjct: 608 NFMQRIAYINMT-----GYPVTSVFLLF-YLLFPVIWIFRGIFYIQKPFPTYVLYLVIVI 661

Query: 278 SLEELLGL 255
            + E++G+
Sbjct: 662 FMSEMIGM 669


>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
          Length = 775

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 123 VYGVELRDQDDVATLFNLQQKLNVDIWQHGMARVRDAEVMVSPEQSKE 266
           +YG +  D DD    FN      +++ QH ++     E +V P QS E
Sbjct: 324 IYGDDDDDGDDAVAAFNYPSVAEINVTQHKLS--NSNEDVVHPSQSDE 369


>10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538
          Length = 327

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
 Frame = +3

Query: 258 SKEFFETLDNNGLKYYLKIEDVSKVLKEHEEDLAKWRRNRSNRMIFQDYP-RYAEV-NQY 431
           +KEF  +L  +G KY  +      ++      +++      +    + Y  +  ++ ++Y
Sbjct: 92  AKEFENSLKYSGYKYIHQESSDRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEY 151

Query: 432 MEEIAARYPNLVTLVNAGKSFEGRDIKYLKISTTNFEDPRKPVYFMDAMMHARE 593
              +   YP L        + E    + +KI     E+PR+ +  +D ++   E
Sbjct: 152 NNSMKKNYPGLRKKKEKSLAIETPRTQEIKIEQIKSEEPREEIQKLDKVLSEEE 205


>08_01_0064 +
           444888-444959,445073-445277,445736-445901,446029-446251,
           446982-447058,447370-447557,447845-447942,448202-448335,
           448421-448555,448832-448960,449263-449632,449897-450018,
           450155-450274,450396-450626,450706-450894,450978-451089,
           451193-451438
          Length = 938

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 387 MIFQDY-PRYAEVNQYMEEIAARYPNLVTLVNAGKSFEGR 503
           +I Q Y P Y     + +++A RY + + ++N  K+FE R
Sbjct: 309 IIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKR 348


>04_04_1679 + 35316170-35316628,35317064-35317219
          Length = 204

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 168 RESPHHPGLEAQHR--RQHVWSKYRVYRRTRSLLKRE*QKN 52
           RE P HPG+  + R  +Q   ++Y+  ++ R L KR+  +N
Sbjct: 108 RERPPHPGIRKEFRWVKQEDGTEYQGMKKLRILAKRQEVEN 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,485,958
Number of Sequences: 37544
Number of extensions: 390755
Number of successful extensions: 1031
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)