Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l17f
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    31   0.17 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    28   1.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   6.4  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   6.4  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   8.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   8.5  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   8.5  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 90  KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*I 269
           K +D  ++ +E   T       + +    T +DSR R+        + RKR H       
Sbjct: 144 KLKDRTEASKEESKTVTDHSNRRESRRESTYYDSRERNGKRTSRSTLDRKRFHDA----- 198

Query: 270 QETEKRRFGRRIQHHS 317
            +TE+ R+GR    HS
Sbjct: 199 SDTERNRYGRSPSPHS 214


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
          Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 84 TRVAQTQTFVFRTRTLQRPNTECTQ 10
          TR+ Q   +V R  T + PNTE TQ
Sbjct: 15 TRIVQLDNYVTRLSTEKSPNTEITQ 39


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 736  IGPAVLEFSETNEQQFIFIYIDR*ISSVLR*MYITSNPPSLRFENCNLL*ISQLFN 569
            + PA L+F ET+  + + +YID  I  +   + +       R     LL + + FN
Sbjct: 835  LNPAELDFEETSVSKHLGLYIDEMIKKLTALLKVKKVKTLTRSSQFLLLNLIEAFN 890


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 712 SETNEQQFIFIYIDR*ISSVLR*MYITSNPPSLRFENCNLL*ISQLFNGCYYT 554
           ++ N Q F F+ +D     V      ++ PP LRF   N+L  + + +G Y T
Sbjct: 285 AKDNNQSFRFLELD-----VTEKFLSSAMPPGLRFPAVNILGDNLILSGIYLT 332


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 216 DSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHHSIKRERAQR 341
           DS    ++R HR  H    +   R      QH S KRE ++R
Sbjct: 162 DSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRR 203


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 720 SSLARLTNSNSFLYI*IDRFLQFYAKCILL 631
           S+   LT S S L   +DR +QFY K I L
Sbjct: 198 STFYSLTESKSGLVNSVDRCIQFYEKSISL 227


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 DNKKKYLHYIA*NKIAFSVPIPLCM 474
           +N K +  Y++ N+   S+P P+C+
Sbjct: 422 ENSKNFHEYLSGNQSVISIPEPVCI 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,796
Number of Sequences: 5004
Number of extensions: 62011
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)