Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l17f
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0084 - 25690346-25691206                                         33   0.18 
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789...    30   2.2  
01_03_0060 - 12112595-12113974,12115970-12116077                       30   2.2  
07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344...    29   5.1  
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    29   5.1  
08_01_0876 - 8598664-8599374                                           28   8.9  

>02_05_0084 - 25690346-25691206
          Length = 286

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -1

Query: 239 FPMNRAAISSDGMTMSTIML-GSWWGGSFVS-LPMPSREESFPTALTTVS-VFPRHVSLK 69
           +P   AA+   GM  ST    G   GG  ++ LP  SR +S  TA  +     P H+S +
Sbjct: 197 YPPPPAAVGGVGMFHSTTTTTGGMLGGMALAVLPWVSRGQSPATAAASAYYTSPYHMSPR 256

Query: 68  LRRSYFEPER 39
           LRR + E ER
Sbjct: 257 LRRQHMEVER 266


>03_06_0762 +
           36078414-36078539,36078700-36078750,36078832-36078981,
           36079055-36079803,36079914-36080013,36080116-36080259,
           36080333-36080452,36080532-36080846
          Length = 584

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 162 AAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHHSIKR 326
           AAPP + HD  H HP       V  +R+ +     + E +K+       H  + R
Sbjct: 25  AAPPPSSHDDAHPHPHPQSRRTVPARRLRQRLEQEVSELKKQLRNEEAVHDILNR 79


>01_03_0060 - 12112595-12113974,12115970-12116077
          Length = 495

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 156 KTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQH 311
           +  A  R   D++H  P     GP HR +    HHL   E  KR +  R  H
Sbjct: 74  RVPASVRDSVDNKHYEPRLVSIGPYHRSK----HHLRAMEDRKRLYLLRFLH 121


>07_03_0328 +
           16833423-16833541,16833638-16833791,16834449-16834490,
           16834964-16835104,16835471-16835728,16835857-16836492
          Length = 449

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 660 LQFYAKCILLATRPRFASKTAIYYRFLNYLMDVIIHINLPLQ 535
           LQ    CI    R  F  + A ++RF  + +D  IH  LP++
Sbjct: 365 LQNSTSCITEMNRSIFEQEFAPFFRFHGFKLDCSIHSKLPVR 406


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -1

Query: 200 TMSTIMLGSWWGGSFV-----SLPMPSREESFPTALTTVSVFPRH 81
           T S   L SW+ G+ +     +LP PSR+ S P  L    VF  H
Sbjct: 431 TASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSH 475


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 276 TEKRRFGRRIQHHSIKRERAQR 341
           T +RR   R++H S+KRER +R
Sbjct: 191 TRRRRCRLRLRHRSMKRERVER 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,471,765
Number of Sequences: 37544
Number of extensions: 381601
Number of successful extensions: 1113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)