Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17l17f
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical p... 33 0.16
U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin iso... 33 0.16
U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin iso... 33 0.16
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 33 0.28
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 72 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 206
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 72 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 206
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 72 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 206
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 72 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 206
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +3
Query: 135 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHH 314
G H R PPR + R+RH G H+ + HH Q+ +R+ R +H
Sbjct: 67 GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHH--NQDRNRRQNHDRNRHQ 122
Query: 315 SIKRERAQ 338
S R R Q
Sbjct: 123 SQGRNRQQ 130
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +3
Query: 135 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHH 314
G H R PPR + R+RH G H+ + HH Q+ +R+ R +H
Sbjct: 911 GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHH--NQDRNRRQNHDRNRHQ 966
Query: 315 SIKRERAQ 338
S R R Q
Sbjct: 967 SQGRNRQQ 974
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 280 KNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQISLR-ESQIN 399
K+D+LEDE NTI L +HS P ++S R +SQ+N
Sbjct: 227 KHDELEDELNTIALE-ELHSTTRDTSPPRTRLSTRAQSQLN 266
>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
protein F31B12.2 protein.
Length = 1089
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = +3
Query: 135 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHH 314
G +R K+ + R + R ++ + D G KRVH ++ +R +
Sbjct: 499 GNNRNFGKSKSFDRREDSKRDKNYLRVDQGSRASKRVHIRRSSSVEIIRPKRLSSGAKDI 558
Query: 315 SIKRERAQRGICSLVSSTPNKFTGIANKR*QKKIPS-LHSIKQNR 446
+ R + G + S +K T ++ QK +P + S+ ++R
Sbjct: 559 KNRERRKRLGTDTSSGSNRSKKTNSSSSSVQKHLPKYIQSLFRSR 603
>Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical
protein F56F3.1 protein.
Length = 761
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 141 HRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVH 248
H Q+ QH HR P + GP H++ +H
Sbjct: 411 HLQKFAKQQAESGQHIHHHRQPTPPNGGPQHQQHLH 446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,723
Number of Sequences: 27780
Number of extensions: 343383
Number of successful extensions: 852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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