Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17l12f
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 83 4e-17
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 81 2e-16
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 30 0.30
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 29 0.52
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 29 0.69
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 27 3.7
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 4.8
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 6.4
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 25 8.5
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 25 8.5
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 8.5
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 83.0 bits (196), Expect = 4e-17
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Frame = +1
Query: 244 YTYLLGDKKTGEVVLIDPVLEHAERDA--KLIQELGFKLIYAMNTHMHADHITGTGKLKS 417
Y YLL ++T + ++DP + K ++ L + TH HADH G LK
Sbjct: 18 YAYLLLCEETRQAAIVDPAEVNVVMPILKKKLKNKEIDLQAILTTHHHADHSGGNLNLKK 77
Query: 418 LVPGTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYICHEQS--LAF 591
P G D + + L D + +R G+ ++ A TP HT + + H + F
Sbjct: 78 EFPHVTIYGGSDQNGVSHV-LQDKETLRIGNVQIEALHTPCHTRDSICFYAHSSNEHAVF 136
Query: 592 TGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPAHDY 729
TGDTL GCGR F EG + ++ +++ + +LP+ V+YP H+Y
Sbjct: 137 TGDTLFNAGCGR--FFEGTAAEMHIALNAVLSSLPNNTVIYPGHEY 180
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 81.0 bits (191), Expect = 2e-16
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Frame = +1
Query: 238 STYTYLLGDKKTGEVVLIDPVLEHAERDAKLIQELGFK----LIYAMNTHMHADHITGTG 405
+ Y YLL KT ++DP E +I+E K L Y + TH H DH G
Sbjct: 16 NNYAYLLTCDKTKITAIVDPA--EPESVIPVIKEKTAKKEIDLQYILTTHHHYDHAGGNE 73
Query: 406 KLKSLVPGTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYICHEQS- 582
+ S P K GK++ D ++ + G ++ A TP HT + Y S
Sbjct: 74 DILSYFPSLKVYGGKNASG-VTYTPKDKEIFKVGEVQVEALHTPCHTQDSICYYVSSPSK 132
Query: 583 -LAFTGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPAHDY 729
FTGDTL GCGR F EG+++ + ++++ + LPD+ V YP H+Y
Sbjct: 133 RAVFTGDTLFTSGCGR--FFEGDAKQMDYALNHVLAALPDDTVTYPGHEY 180
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 208 FFRQLFDTVSSTYTYLLGDKKTGEVVLIDPVLEHAERD 321
FFRQ D + Y+ G TG+ VL+ VL+H D
Sbjct: 182 FFRQHLDANAGGALYVSGAPGTGKTVLLHNVLDHVVSD 219
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 508 SHELLAAATPGHTNGC--LTYICHEQSLAFTGDTLLIR 615
++E + A TP H L ++CH+QS +FT L I+
Sbjct: 534 AYERVLAETPNHAKVLQQLGWLCHQQSSSFTNQDLAIQ 571
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 29.1 bits (62), Expect = 0.69
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 241 TYTYLLGDKKTGEVVLIDPVLEHAE---RDAKLIQELGFKLIYAMNTH 375
T L+GD + +LID +++ A R A+ ++E G IYA+ TH
Sbjct: 226 TSLMLVGDVQNKVAILIDDLIDTAYTLVRAAEFVKEHGASKIYALVTH 273
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 3.7
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Frame = +1
Query: 220 LFDTVSSTYTYLLGDKKTGE---VVLIDPVLEHAERD-AKLIQELGFKLIYAMNT----- 372
L+ VSSTY + DKK E + + + +L+ E +L ++ G L Y + +
Sbjct: 512 LYRNVSSTYVRIPVDKKCMEDSAISMKNILLDCGEGTLGRLSRQYGDNLKYEIASLRWIY 571
Query: 373 --HMHADHITGT-GKLKS 417
HMHADH G G LK+
Sbjct: 572 ISHMHADHHAGVIGVLKA 589
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +1
Query: 490 DLVRFGSHELLAAATPGHTNGCLTYICHEQSLAFTGDTLLIRGCG-RTDFQEGNSETLYK 666
+LVR G EL+ H + C + E S GD + G + G +ET+Y
Sbjct: 48 ELVRVGHEELVGEVIRIHQDKCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYD 107
Query: 667 SVHNRIFTLPDE 702
+ + + D+
Sbjct: 108 GIQRPLKQIFDK 119
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 529 ATPGHTNGCLTYICHEQSLAFTGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPD 699
A P NG L Y E + G L + GR F + L+K V++ ++ +PD
Sbjct: 197 AAPEVINGKL-YAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPD 252
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +1
Query: 241 TY-TYLLGDKKTGEVVLIDPVLEHAERDAKLIQELGFKLIYAMNTHMHADHITGTGKLKS 417
TY YL+ + +++ + +R A L++ LGF I ++ + K KS
Sbjct: 274 TYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKS 333
Query: 418 LVPGTKSVIGKDSGAQA-DIHLLD 486
T ++ D A+ DI L+D
Sbjct: 334 GARST--LVATDVAARGLDIPLVD 355
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 211 FRQLFDTVSSTYTYLLGDKKTG--EVVLIDPVLEHAERDAKLIQELGFKLIYAMNTHMHA 384
+R L + + + + L K E + + V+ H +DA + +E G + I+A A
Sbjct: 45 WRHLVENLIAFFKQLESTSKNNAKEYMKLSKVIVHPYKDANVFEEHGIQDIFAALRDQTA 104
Query: 385 DHITGTGKLKSLVPGT 432
+ + ++ +PGT
Sbjct: 105 AIASDSEQISIQLPGT 120
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 265 KKTGEVVLIDPVLEHAERDAKLIQELGFKLI 357
+K E+ + HAE+ KLIQ+LG K +
Sbjct: 9 EKISELPAGSTTVVHAEKAQKLIQKLGLKRV 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,369
Number of Sequences: 5004
Number of extensions: 73255
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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