Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17l12f
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0183 - 27268190-27268281,27268454-27268478,27268568-272686... 158 2e-42
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 84 1e-16
09_04_0738 - 19828852-19828892,19830033-19830156,19830515-198307... 64 1e-10
01_01_0217 + 1848970-1849251,1849419-1849566,1849638-1849789,185... 50 3e-06
12_02_1111 - 26157796-26160330 32 0.54
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198... 31 1.3
05_05_0016 - 21542300-21542886,21542956-21543286,21543310-215434... 30 2.2
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 30 2.2
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683... 29 2.9
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 29 3.8
12_01_0206 + 1555278-1555448,1555710-1555772,1556236-1556307,155... 29 3.8
11_01_0202 + 1606317-1606487,1606743-1606805,1607045-1607116,160... 29 3.8
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 29 3.8
02_02_0690 + 12990591-12990746,12990807-12990902,12991667-12992089 29 3.8
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 29 3.8
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 29 3.8
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 29 5.1
05_07_0208 + 28412736-28415348 29 5.1
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 29 5.1
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 28 6.7
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 28 6.7
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 28 6.7
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 28 8.8
>01_06_0183 -
27268190-27268281,27268454-27268478,27268568-27268621,
27268688-27268747,27269166-27269300,27270106-27270213,
27270330-27270458,27270845-27270905,27271081-27271112,
27271161-27271289
Length = 274
Score = 158 bits (384), Expect(2) = 2e-42
Identities = 83/156 (53%), Positives = 102/156 (65%), Gaps = 6/156 (3%)
Frame = +1
Query: 286 LIDPVLEHAERDAKLIQELGFKLIYAMNTHMHADHITGTGKLKSLVPGTKSVIGKDSGAQ 465
LIDPV +RD LI+ELG KL+YAMNTH+HADH+TGTG +K+ +PG KSVI K S A+
Sbjct: 75 LIDPVDRTVDRDLNLIKELGLKLVYAMNTHVHADHVTGTGLIKTKLPGVKSVIAKVSKAK 134
Query: 466 ADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYICHE------QSLAFTGDTLLIRGCGR 627
AD + GD + FG+ L +TPGHT GC+TY+ E +AFTGD LLIR CGR
Sbjct: 135 ADHFIEHGDKIYFGNLFLEVRSTPGHTAGCVTYVTGEGDDQPSPRMAFTGDALLIRACGR 194
Query: 628 TDFQEGNSETLYKSVHNRIFTLPDEYVLYPAHDYRG 735
TDFQ IFTLP + +LYP HDY+G
Sbjct: 195 TDFQ--------------IFTLPKDTLLYPGHDYKG 216
Score = 32.7 bits (71), Expect(2) = 2e-42
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 211 FRQLFDTVSSTYTYLLGD 264
FRQLF+ SSTYTYLL D
Sbjct: 17 FRQLFEKESSTYTYLLAD 34
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 83.8 bits (198), Expect = 1e-16
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 6/179 (3%)
Frame = +1
Query: 211 FRQLFDTVSSTYTYLLGDKKTGEVVLIDPVLEHAERDAKLIQELGFKLIYAMNTHMHADH 390
+ L+ S + L+ D+ T +DPV E+ E+G ++ + TH H DH
Sbjct: 13 YAYLYPPESILVSCLIVDESTKSAAAVDPV--EPEKVLAAAAEVGVRIDCVLTTHHHWDH 70
Query: 391 ITGTGKLKSLVPGTKSVIGK-DSGAQADIHLLDGDLVRFGSH-ELLAAATPGHTNGCLTY 564
G K+ VPG K G D+ + +G + G E+L TP HT G ++Y
Sbjct: 71 AGGNEKMAQSVPGIKVYGGSLDNVKGCTDQVENGTKLSLGKDIEILCLHTPCHTKGHISY 130
Query: 565 IC----HEQSLAFTGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPAHDY 729
E FTGDTL I GCGR F EG +E +Y+S+ + +LP +Y H+Y
Sbjct: 131 YVTSKEEEDPAVFTGDTLFIAGCGR--FFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEY 187
>09_04_0738 -
19828852-19828892,19830033-19830156,19830515-19830718,
19831505-19831690,19832098-19832172
Length = 209
Score = 63.7 bits (148), Expect = 1e-10
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Frame = +1
Query: 217 QLFDTVSSTYTYLLGDKKTGEVVLIDPVLEHAERDAKLIQELGFKLIYAMNTHMHADHIT 396
+L + Y Y+L D TG V ++DP A +++ L Y +NTH H DH
Sbjct: 86 ELVPCLQDNYAYILHDVDTGTVGVVDP--SEATPIINALEKRNQNLTYILNTHHHYDHTG 143
Query: 397 GTGKLKSLVPGTKSVIG----KDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGCL 558
G +LK+ G K VIG +D DI L +GD F H++L TPGHT+ L
Sbjct: 144 GNLELKAKY-GAK-VIGSAKDRDRIPGIDITLSEGDTWMFAGHQVLVMETPGHTSDVL 199
>01_01_0217 +
1848970-1849251,1849419-1849566,1849638-1849789,
1850146-1850328,1850690-1850765,1850956-1851033,
1851584-1851669,1852680-1852753,1852920-1852965,
1853211-1853320,1853600-1853774,1854501-1854749
Length = 552
Score = 49.6 bits (113), Expect = 3e-06
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Frame = +1
Query: 274 GEVVLIDP--VLEHAERDAKLIQELGFKLIYAMNTHMHADHITGTGKLKSLVP------- 426
G+ +LIDP + + A+L+ L KL+ + TH H DH+ G ++ P
Sbjct: 239 GDALLIDPGCCSQVHGKLAELVNSLPKKLVVLV-THHHHDHVDGLSVVQRCNPDAVLLTH 297
Query: 427 -GTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYICHEQSLAFTGDT 603
T S IGK + + + G+ + G +L PGHT+G + + + GD
Sbjct: 298 KNTMSRIGKGNWSIGYTAVAGGENICIGDQQLQVVFAPGHTDGHMGVLHVNTNALIVGDH 357
Query: 604 LLIRGCGRTDFQE-GNSETLYKSVHNRIFTLPDEYVLYPAH 723
+ +G D + GN + +++ +N + P +VL P H
Sbjct: 358 CVGQGSATLDNRAGGNMKDYFQTTYNFLDMSP--HVLIPMH 396
>12_02_1111 - 26157796-26160330
Length = 844
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 659 RVSELPSWKSVRPQPRIKRVSPVNA--NDCS*HM*VKHPLVWPGVAAARSSWLPNRTRSP 486
R+S SW++ P+P ++ + ++H ++ P ++AA SW P R + P
Sbjct: 493 RISGTNSWEARDPEPMLRFLESWERLLPPIVLQSILEH-VIMPKLSAAVDSWDPRREKVP 551
Query: 485 SSRWISAWAP 456
W+ W P
Sbjct: 552 IHVWVHPWLP 561
>08_01_0238 -
1988688-1988830,1988989-1989257,1989339-1989600,
1989693-1989805,1990560-1990594,1990771-1990878,
1992178-1992483
Length = 411
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -3
Query: 422 TSDFNFPVPVIWSACMCVFIA*MSLKPSSCINLASLSACSKTGSMRTTSPVFLSPSKYVY 243
++ +NFP ++ C+C FI MS+ I+ S TG +R S V LS + +
Sbjct: 294 SASWNFPPFTLFLNCLCTFILNMSV--FLVISRTSALTARVTGVVRDWSVVLLSAAIFAD 351
Query: 242 VLLTVSN 222
LT N
Sbjct: 352 TQLTFIN 358
>05_05_0016 -
21542300-21542886,21542956-21543286,21543310-21543419,
21543526-21544069,21544190-21544345
Length = 575
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -3
Query: 557 KHPLVWPGVAAARSSWLPNRTRSPSSRWISAWAPESLPMTLLVPGTSDFNF 405
KH WP V A R+ W ++W S W +P LL F F
Sbjct: 114 KHGCPWPAVPAIRTKW--------GNKWHSKWFYHQIPADLLANKECPFTF 156
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 545 VWPGVAAARSSWLPNRTRSPSSR--WISAWAPESLPMTLLVPGTSDF 411
V P AA + P+ P+S W++ AP S P L VPGT F
Sbjct: 500 VAPAPVAAAAMPFPSPVPLPNSTTAWMAEAAPRSAPQRLPVPGTGVF 546
>04_04_0664 -
27066253-27067155,27067242-27067508,27067707-27068368,
27068479-27069047,27070011-27070108
Length = 832
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = -3
Query: 557 KHPLVWPGVAAARSSWLPNRTRSPSSRWISAWAPESLPMTLLVPGTSDFNF 405
KH WP V A R W ++W S W +P LL F F
Sbjct: 103 KHGCPWPAVLAIRIKW--------GNKWQSRWFYHQIPANLLADKECPFTF 145
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 542 WPGVAAARSSWLPNRTRSPSSRWISAWAPESLPMTLLVPGTSDFNF 405
WP V+A R+ W ++W S W +P++LL F+F
Sbjct: 158 WPAVSAIRAKW--------GNKWQSKWFYHQIPLSLLNDKDCPFSF 195
>12_01_0206 +
1555278-1555448,1555710-1555772,1556236-1556307,
1556430-1556537,1556644-1556724,1556861-1556914,
1557020-1557145,1557228-1557317,1557603-1557725,
1557831-1557938,1558287-1558400,1558530-1558586,
1558667-1558741,1558915-1558989
Length = 438
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 595 GDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPA 720
G L + G F++ N TLYK + N FT P + +PA
Sbjct: 201 GVILFVLLAGYLPFEDSNLMTLYKKISNAEFTFP-PWTSFPA 241
>11_01_0202 +
1606317-1606487,1606743-1606805,1607045-1607116,
1607244-1607351,1607497-1607538,1607965-1608018,
1608130-1608255,1608338-1608427,1608735-1608857,
1608963-1609070,1609412-1609573,1609655-1609711,
1609792-1609884
Length = 422
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 595 GDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPA 720
G L + G F++ N TLYK + N FT P + +PA
Sbjct: 188 GVILFVLLAGYLPFEDSNLMTLYKKISNAEFTFP-PWTSFPA 228
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 542 WPGVAAARSSWLPNRTRSPSSRWISAWAPESLPMTLLVPGTSDFNF 405
WP V+A R+ W ++W S W +P++LL F+F
Sbjct: 158 WPAVSAIRAKW--------GNKWQSKWFYHQIPLSLLNDKDCPFSF 195
>02_02_0690 + 12990591-12990746,12990807-12990902,12991667-12992089
Length = 224
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 667 ICRGSQSYPPGNRCGRNPGSRGCH 596
I G+ P GN C R PG GC+
Sbjct: 4 ILAGASRCPAGNTCTRRPGDLGCN 27
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 542 WPGVAAARSSWLPNRTRSPSSRWISAWAPESLPMTLLVPGTSDFNF 405
WP V+A R+ W ++W S W +P++LL F+F
Sbjct: 158 WPAVSAIRAKW--------GNKWQSKWFYHQIPLSLLNDKDCPFSF 195
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 542 WPGVAAARSSWLPNRTRSPSSRWISAWAPESLPMTLLVPGTSDFNF 405
WP V+A R+ W ++W S W +P++LL F+F
Sbjct: 158 WPAVSAIRAKW--------GNKWQSKWFYHQIPLSLLNDKDCPFSF 195
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 542 WPGVAAARSSWLPNRTRSPSSRWISAWAPESLPMTLLVPGTSDFNF 405
WP V+A R+ W ++W S W +P++LL F+F
Sbjct: 133 WPAVSAIRAKW--------GNKWQSKWFYHQIPVSLLNDKDCPFSF 170
>05_07_0208 + 28412736-28415348
Length = 870
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = -3
Query: 350 LKPSSCINLASLSACSKTGSMRT 282
+KP+S +A+LSAC+ TG++R+
Sbjct: 495 VKPNSVTFIAALSACAATGALRS 517
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 674 WTDL*RVSELPSWKS---VRPQPRIKRVSPVNAN 582
WT R+ PSWK V +PRI + P+NAN
Sbjct: 125 WTLEHRMEITPSWKGELKVPEKPRIGAIDPLNAN 158
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 28.3 bits (60), Expect = 6.7
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Frame = -2
Query: 720 RGIQHVLVGQREYSIVDRFVEGLRVTLLEIGAAATPDQEGVTSERQ*LFVTYV----SQA 553
+G ++L + ++ D+F+EGL L+ A PD E V S+ + Y+ S
Sbjct: 282 QGHFNILHKKHSVTLPDQFIEGLSSACLQGRAQIVPDPE-VLSKDSSSLIFYLDGAHSPE 340
Query: 552 SISVARSRSSEEFVAPEPHQVTVEQVDIGLGTR-ILAYDAFSTRYE*LQLPSAGYMVGVH 376
S+ + S E ++Q+ IG +R IL ++ S R LP +
Sbjct: 341 SMEICAKWFSCVTRKDEQQPGPLDQLHIGTNSRKILLFNCMSVRDPQRLLPCLLATCAQN 400
Query: 375 VCVHSINE 352
CV + +
Sbjct: 401 ACVFLLKQ 408
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 560 VKHPLVWPGVAAARSSWLPNRTRSPSS 480
+ PL WP + WLP+ +RSP S
Sbjct: 34 ISQPLEWPSLTV---QWLPSHSRSPGS 57
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 542 WPGVAAARSSWLPNRTRSPSSRWISAWAPESLPMTLLVPGTSDFNF 405
WP V+A R W ++W S W +P++LL F+F
Sbjct: 45 WPAVSAIREKW--------GNKWQSKWFYHQIPVSLLNDKDCPFSF 82
>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +1
Query: 151 SNLLFHVRTMSAVHKDTTFFFRQLFDTVSSTYTYL--LGDKKTGEVVLIDPVLEHAERDA 324
S +FHV T S + + R F T + +TYL D K V + ++ A D
Sbjct: 797 SESIFHVITDSTILRFMMETQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDG 856
Query: 325 KLIQELGFKLIYAMNTHMHADHITGTG 405
+Q+ ++ ++ H H+ G G
Sbjct: 857 DYLQDSWEHVLTCLSRFEHL-HLLGEG 882
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,712,966
Number of Sequences: 37544
Number of extensions: 515527
Number of successful extensions: 1414
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -