Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17l12f
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68493-5|CAA92800.1| 237|Caenorhabditis elegans Hypothetical pr... 221 4e-58
AL023828-5|CAA19450.1| 260|Caenorhabditis elegans Hypothetical ... 71 9e-13
AL132949-40|CAN99706.1| 329|Caenorhabditis elegans Hypothetical... 52 3e-07
AL132949-39|CAB61094.1| 295|Caenorhabditis elegans Hypothetical... 52 3e-07
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 29 3.4
AL132862-19|CAB70231.2| 640|Caenorhabditis elegans Hypothetical... 29 4.5
Z92785-1|CAB07199.2| 299|Caenorhabditis elegans Hypothetical pr... 28 6.0
>Z68493-5|CAA92800.1| 237|Caenorhabditis elegans Hypothetical
protein C33A12.7 protein.
Length = 237
Score = 221 bits (540), Expect = 4e-58
Identities = 96/175 (54%), Positives = 129/175 (73%)
Frame = +1
Query: 211 FRQLFDTVSSTYTYLLGDKKTGEVVLIDPVLEHAERDAKLIQELGFKLIYAMNTHMHADH 390
FRQL + SSTYTY++G KTG+ V+IDPV++ RD ++I++L LIY +NTH+HADH
Sbjct: 11 FRQLIEFKSSTYTYIIGCHKTGKAVIIDPVVDTVSRDIQIIRDLNLDLIYGLNTHVHADH 70
Query: 391 ITGTGKLKSLVPGTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYIC 570
ITGT LK++ P KSV+ SG +AD ++ DG+++ G +L TPGHTNGCLTY+
Sbjct: 71 ITGTNSLKTVFPTMKSVLSSKSGGEADKYVSDGEIIEIGGLKLEVRETPGHTNGCLTYVE 130
Query: 571 HEQSLAFTGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPAHDYRG 735
H AFTGD LLIR CGRTDFQ+GN +L+ SVH++IFTLP++YV+Y H+Y G
Sbjct: 131 HSLRSAFTGDALLIRACGRTDFQQGNPASLFDSVHDKIFTLPEDYVVYVGHNYNG 185
>AL023828-5|CAA19450.1| 260|Caenorhabditis elegans Hypothetical
protein Y17G7B.3 protein.
Length = 260
Score = 70.9 bits (166), Expect = 9e-13
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Frame = +1
Query: 265 KKTGEV---VLIDPVLEHAERDAKLIQELGFKLIYAMNTHMHADHITGTGKLKSLVPGTK 435
KK+ E +L+D V E ++ L + + + TH H DH G + P
Sbjct: 19 KKSSEARAALLVDLVNEEDYKE--LADKENIDITAVLTTHHHYDHCGGNEGFRRQFPNV- 75
Query: 436 SVIGKDSGAQA-DIHLLDGDLVRFGSHELLAAATPGHTNGCLTY-ICH------EQSLAF 591
++G DS A D H+ GD+ F ++ +TP HT+G + Y I + + F
Sbjct: 76 MILGGDSRIPAMDRHVKHGDMAEFAGLQIKCLSTPCHTSGHICYHITNPAADSTSPGVVF 135
Query: 592 TGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPAHDY 729
TGDTL I GCGR F EG + + +++ + LP E ++P H+Y
Sbjct: 136 TGDTLFIAGCGR--FFEGTAPQMDVALNEILKNLPVETQIFPGHEY 179
>AL132949-40|CAN99706.1| 329|Caenorhabditis elegans Hypothetical
protein Y53F4B.39b protein.
Length = 329
Score = 52.4 bits (120), Expect = 3e-07
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Frame = +1
Query: 229 TVSSTYTYLLGDKKTG-EVVLIDP----VLEHAERDAKLIQELGFKLIYAMNTHMHADHI 393
T+ T TYLLG TG + +L+D V E+ ++ + Y + TH H DH+
Sbjct: 63 TLQGTNTYLLG---TGAKKILVDTGEPNVTEYISALKSVLASTNSHIEYIVITHWHGDHV 119
Query: 394 TGTGKL------KSLVPGTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGC 555
G + K +P K KD G + ++ DG V L ATPGHT
Sbjct: 120 GGIDNITDEILDKKKIPIYKMKRDKDEGVERFHYVDDGFEVAVDGATLKLIATPGHTADH 179
Query: 556 LTYICHEQSLAFTGDTLLIRGCGRTDFQE 642
+ E+ F+GD +L G G T F++
Sbjct: 180 FSLWLQEERALFSGDCIL--GEGTTVFED 206
>AL132949-39|CAB61094.1| 295|Caenorhabditis elegans Hypothetical
protein Y53F4B.39a protein.
Length = 295
Score = 52.4 bits (120), Expect = 3e-07
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Frame = +1
Query: 229 TVSSTYTYLLGDKKTG-EVVLIDP----VLEHAERDAKLIQELGFKLIYAMNTHMHADHI 393
T+ T TYLLG TG + +L+D V E+ ++ + Y + TH H DH+
Sbjct: 29 TLQGTNTYLLG---TGAKKILVDTGEPNVTEYISALKSVLASTNSHIEYIVITHWHGDHV 85
Query: 394 TGTGKL------KSLVPGTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGC 555
G + K +P K KD G + ++ DG V L ATPGHT
Sbjct: 86 GGIDNITDEILDKKKIPIYKMKRDKDEGVERFHYVDDGFEVAVDGATLKLIATPGHTADH 145
Query: 556 LTYICHEQSLAFTGDTLLIRGCGRTDFQE 642
+ E+ F+GD +L G G T F++
Sbjct: 146 FSLWLQEERALFSGDCIL--GEGTTVFED 172
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 301 LEHAERDAKLIQELGFKLIYAMNTHMHADHITGTGKLKSLVPGTKSVIGKDSGAQADIHL 480
L AER AK + +K ++ D TGK+ +V V+ KD G++ +HL
Sbjct: 311 LRDAERQAKEKRLRLWKSYQPTSSAYSGDRKAFTGKVVEIVLSDAVVVQKDDGSEVKLHL 370
>AL132862-19|CAB70231.2| 640|Caenorhabditis elegans Hypothetical
protein Y73F8A.25a protein.
Length = 640
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 616 GCGRTDFQEGNSETLYKSVHNRIFTLP 696
GC R D++ G +E Y +HN LP
Sbjct: 225 GCERKDYESGMAEAFYPIMHNAPTQLP 251
>Z92785-1|CAB07199.2| 299|Caenorhabditis elegans Hypothetical
protein F31E9.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +1
Query: 130 AADRYKLSNLLFHVRTMSAV--HK---DTTFFFRQLFDTVSSTYTYLLG 261
A+ Y L +L+ ++ T + H+ D++FF +FD + + +TY++G
Sbjct: 10 ASTLYGLPSLILYILTFVVILRHRKTFDSSFFQLYVFDGIMNLFTYIMG 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,279,086
Number of Sequences: 27780
Number of extensions: 432010
Number of successful extensions: 1086
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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