Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l12f
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   0.32 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 187 VHKDTTFFFRQLFDTVS-STYTYLLGDKKTGE 279
           +H D T FF  +      +  T +LGDKKT E
Sbjct: 385 IHDDRTLFFHPMSSFREFAVSTSILGDKKTAE 416


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 462 PSRYPPARR*PGAVREPRTPR 524
           P + PP+R+  G  R  RTPR
Sbjct: 396 PRQTPPSRKESGRRRRRRTPR 416


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 647 LPSWKSVRPQPRIKRVSPV 591
           LPSW    PQP I +  P+
Sbjct: 28  LPSWDGKMPQPCILKPKPL 46


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 36  WLKIKLCFDFESKRYFKRLKNVAIIGVWWTEGG 134
           W  +   +D ES     + KNV    +WW + G
Sbjct: 56  WYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQG 88


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 36  WLKIKLCFDFESKRYFKRLKNVAIIGVWWTEGG 134
           W  +   +D ES     + KNV    +WW + G
Sbjct: 56  WYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQG 88


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = -3

Query: 548 LVWPGVAAARSSWLPNRTRSPSSRWISAWAP 456
           LV P +      W P     P   WI  W P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHPWLP 548


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 643  GNSETLYKSVHNRIFTLPDEYVL 711
            GN+  LY + HN+I + P   VL
Sbjct: 1468 GNTYQLYLTSHNKIGSSPSSPVL 1490


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 643  GNSETLYKSVHNRIFTLPDEYVL 711
            GN+  LY + HN+I + P   VL
Sbjct: 1464 GNTYQLYLTSHNKIGSSPSSPVL 1486


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 85  NVLKMLQSLVFGGRK 129
           NVL+ LQ+ VF GRK
Sbjct: 804 NVLRELQNHVFIGRK 818


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 673 GPICRGSQSYPPGNR 629
           G +CRG    PP  R
Sbjct: 645 GDVCRGKLKLPPDGR 659


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,969
Number of Sequences: 438
Number of extensions: 5220
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)