Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l10f
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.10 |||mitochondrial intermembrane space protein sorting p...   121   1e-28
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    71   2e-13
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    29   0.96 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   2.2  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.9  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   3.9  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    27   3.9  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    26   6.7  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    26   6.7  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   8.9  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   8.9  

>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score =  121 bits (292), Expect = 1e-28
 Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
 Frame = +3

Query: 138 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWF 314
           MKI+ S H F +P+E V+ A W+KYPN     VI  D ++RKV+D GVL+T RL++    
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQA 60

Query: 315 FPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSK 494
            PRW   LI  A+ CY  E S V+   R +TL T+NLTF   + VDETV Y+PHP +   
Sbjct: 61  LPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHP-ELEA 119

Query: 495 TLLKQEAVVTVQGV--PLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEI 644
           T+ +QEA +        LS+ +E    +     A +G++  E V+ K +  +
Sbjct: 120 TVFQQEARIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESVLEKINMSV 171


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
 Frame = +3

Query: 144 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWFFP 320
           I T +   N  W TV+ A   +YPNP +  V+  DV+ER V D G L+T RL+  +   P
Sbjct: 4   ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQGRLP 63

Query: 321 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTL 500
           RWA  L+   K  Y  E S ++P ++++  +T NL     + V E  R+     + SKT+
Sbjct: 64  RWASDLLNVNK-SYILERSVIDPSKQELKSETFNLDHVKILRVIEYSRFIQSSENCSKTI 122

Query: 501 L 503
           +
Sbjct: 123 V 123


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 564 LTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTK 701
           L N++ +++    +  +WV  K D E+KE+ +     TD  L  T+
Sbjct: 641 LVNRLDVDSFLHPKTPKWVFNKQDQEVKEIKALTSTVTDSTLVDTQ 686


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 26/117 (22%), Positives = 47/117 (40%)
 Frame = +3

Query: 90  RSLSLYCNLH*ILEKNMKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVV 269
           R +  Y N   +L K  KI  +  + + P    A    RKYP    P  IGTD    +  
Sbjct: 316 RKMCNYHNPSILLIKAKKINANHKSSSRPISLDATIP-RKYP----PHCIGTDKAVPQKF 370

Query: 270 DGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHY 440
               H   ++   +   RW Q+ +G     +++ + ++ PI +       +  +C +
Sbjct: 371 GADFHNENILLGAYISTRWRQSHMGFFG-DHSTLLFQLQPIHQVYYASNLDKNYCMF 426


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 171 HPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWFFPRWAQALIGTA 350
           H W+ +       YPN    AV   ++       G +H   L+ S+     WA A++G A
Sbjct: 431 HIWQAMLLYVTDAYPNVSASAVAAFELPSNLGAVGFIHLSALMFSR-MNVHWATAVVGFA 489

Query: 351 KI 356
            +
Sbjct: 490 SL 491


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 456 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 358
           FH  Q N D++L + FL   V ++G+L  +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 760 LDEISS---IDLLADVVMSSIDFFVCDNNSSVLLQAELA 653
           +D+++S   I LL  +++ S+    CDNN + +LQ  +A
Sbjct: 556 IDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIA 594


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 687 LSQTKKSIDDITTSARRSMDDISS 758
           L   KKS DDITT  +R M+D  S
Sbjct: 177 LCSPKKSKDDITTPKKRLMEDTYS 200


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 168 NHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTH 290
           +HP  T A       PNP+ P+ +  DV +   +D  ++ H
Sbjct: 165 SHPIPTPAIQRTSSIPNPLTPSYVVFDVAKPVPIDVNIYDH 205


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +3

Query: 411 KTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNK 575
           +TT +T        E     PHP +S   LL           PL+ Y+  ++ N+
Sbjct: 77  ETTTVTPTVTATAQELSTLNPHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNR 131


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +3

Query: 258 RKVVDGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTN 422
           RK+++ +LH+H  +SS +F+   +   +  A +  +     +NP  R  +  ++N
Sbjct: 42  RKIINEMLHSHSELSS-FFYAEKSNTFLTIAGLAESELFDTLNPAFRISSCPSSN 95


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 489 SKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLN 587
           S  L   ++++ V+GV    +++ L TNKI+L+
Sbjct: 22  SVCLNSSKSLIRVEGVDAVKFLQGLTTNKITLD 54


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 141 KIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSK 308
           K ++ +H   HPW T +     K  N  +P  + + ++ +  +D  L   RL SS+
Sbjct: 259 KRYSVKHVVQHPWLTSSTPFRTKNGNCADPVALASRLMLKLRID--LDKPRLASSR 312


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 371 DIRS--KPNTATDDFKNNKPN 427
           D+RS      ATDDF +NKPN
Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,442
Number of Sequences: 5004
Number of extensions: 68651
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)