Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l09r
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   8.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 665 YSHFPRLFSESFNTCDSLISQ*CSRA----LTAYLLSIGVFIC 549
           +SHFP +F E+F    S  ++  + A    +TA+ +   + IC
Sbjct: 115 WSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYIAIC 157


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 176 IQTLGTILKHLVLVRSHLPSRV 241
           +  LG + KHL + R HL +++
Sbjct: 110 VPQLGNLTKHLQVFRDHLINQI 131


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 291 IMYDSNVNVSKMFISQITLEGR*LRTNTKCFNIVPNV 181
           I+Y  NVN +K    +   +G  LR     + ++ N+
Sbjct: 533 IIYGFNVNATKQIKDEANKKGVSLRFYNVVYKLIDNI 569


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 416 IGSEVLRQPAVDAHKRC 366
           + S VLR P   +H RC
Sbjct: 464 VKSPVLRSPPAFSHSRC 480


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 416 IGSEVLRQPAVDAHKRC 366
           + S VLR P   +H RC
Sbjct: 464 VKSPVLRSPPAFSHSRC 480


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 75  CSTVGKCGECLVEGHSAAV 19
           C TVG   EC+V  +  AV
Sbjct: 44  CLTVGMRPECMVPEYQCAV 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,128
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)