Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l09f
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    26   0.33 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.1  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +1

Query: 82  KHCKARPNV*NSRKK---NKNGSTADIQPGDTVRAPHPGRHVPGAHAPHPGQSAPRRTEV 252
           K  K+RP++    K+   +KNG T D   G  +R   P R     HA        +   +
Sbjct: 48  KEGKSRPSLDIDYKQRVYDKNGMTGDAYGGLNIRPGQPSRQ----HAGFEFGKEYKNGFI 103

Query: 253 RDQPAVRTQHGPAGRHRAAPQLPLRGDVR 339
           + Q  V  Q GP G  R +P   + G  R
Sbjct: 104 KGQSEV--QRGPGG--RLSPYFGINGGFR 128


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 181 HPGRHVPGAHAPHPGQS 231
           HP +H P  + PH G S
Sbjct: 317 HPHQHHPSQYHPHRGSS 333


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 580 LRALEPDELHEHVPVHREVRDALVLQPVRELAEVHA 473
           L A +PD L          ++ALVL+ V+  AE HA
Sbjct: 325 LGADDPDSLRRKRQKINNSQNALVLRHVQAEAEKHA 360


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 447 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 346
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWF 118


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 176 HPIPGGMYPGRMLR 217
           HPIP G YP    R
Sbjct: 288 HPIPTGYYPTMRFR 301


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 447 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 346
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWF 118


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 176 HPIPGGMYPGRMLR 217
           HPIP G YP    R
Sbjct: 288 HPIPTGYYPTMRFR 301


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 155 NPVIPCVHPIPGGMYPGRMLRIQGRVPPGAQRFAINLQCGPNTD 286
           N    C      G+ P   L+ + RVPPG   +  N +C  + D
Sbjct: 441 NSKTKCCFAQDDGLCP-YTLKHKIRVPPGTPIYECNKRCNCDID 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,740
Number of Sequences: 438
Number of extensions: 3927
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)