Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17l07f
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0072 + 14266286-14266552,14266860-14266964,14267063-142671... 49 5e-06
07_03_1442 - 26565339-26565578,26566227-26566274,26566352-265664... 45 6e-05
09_04_0014 + 13760333-13760590,13760751-13760855,13760934-137609... 38 0.009
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880... 34 0.11
04_01_0267 + 3584117-3584922,3585331-3585361 29 4.3
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 29 5.7
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 29 5.7
02_05_0978 - 33242938-33242988,33243729-33243911,33244458-332445... 29 5.7
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 28 7.5
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 28 7.5
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 28 7.5
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 28 7.5
>03_03_0072 +
14266286-14266552,14266860-14266964,14267063-14267110,
14267851-14268099
Length = 222
Score = 48.8 bits (111), Expect = 5e-06
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Frame = +3
Query: 372 LMIHVGVSSIANELTLEVQAHKKGYQRL-DYFDKCPANH-VCTADGAVRIHTKLNVERIC 545
+++H GV+S LE QA + R D P + ++DG++ K V
Sbjct: 88 ILLHFGVNSGTTRFALENQAINEATFRCPDELGWKPQRAPIVSSDGSISNLRKTTVP--V 145
Query: 546 KEFNDASPEDSTRAVSSKDAGRYLCEYIYYTSLSVDNSR---TLFVHVPDTNVYSSEQTA 716
E N + + S DAGR++C Y+YY SL R +LFVH P S E
Sbjct: 146 NEVNKSLQQMGFDVAPSDDAGRFVCNYVYYQSLRFAEQRGIKSLFVHFPLFTTISEEVQM 205
Query: 717 RGLQRIIELCIEQ 755
+ ++E+ Q
Sbjct: 206 NFVATLLEVLASQ 218
>07_03_1442 -
26565339-26565578,26566227-26566274,26566352-26566456,
26566628-26566885
Length = 216
Score = 45.2 bits (102), Expect = 6e-05
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Frame = +3
Query: 378 IHVGVSSIANELTLEVQAHKKGYQRL-DYFDKCPAN-HVCTADGAVRI--HTKLNVERIC 545
IH GV+S A LE QA + R D P + +DGA+ T L V +
Sbjct: 87 IHFGVNSGATRFALENQAVNEATFRCPDELGWKPQRVPIVPSDGAISRTRETTLPVNELT 146
Query: 546 KEFNDASPEDSTRAVSSKDAGRYLCEYIYYTSLSVDNS---RTLFVHVP 683
K + + S DAGR++C Y+YY SL ++LFVHVP
Sbjct: 147 KSLRKTGYD----VMPSDDAGRFVCNYVYYHSLRFAEQHGIKSLFVHVP 191
>09_04_0014 +
13760333-13760590,13760751-13760855,13760934-13760981,
13761450-13761503,13761670-13761900
Length = 231
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 594 SKDAGRYLCEYIYYTSLSVDNS---RTLFVHVP 683
S DAGR++C Y+YY SL ++LFVHVP
Sbjct: 177 SDDAGRFVCNYVYYHSLRFAEQHGIKSLFVHVP 209
>01_01_1112 +
8808544-8808695,8808818-8808961,8809302-8809380,
8809477-8809555,8810338-8810377,8810455-8810589,
8810901-8811038,8811596-8811881
Length = 350
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 363 CVSPTAQVQTHPRFHKLLVFQSKQARTCVYFLFLVYL--KVSRLPNLRSLDD 214
C SP + + +F + +R C +F FL++L S L NLRSL D
Sbjct: 57 CTSPAKKTELEMLGMDASIFDATSSRCCFFFFFLLFLFFVPSSLTNLRSLQD 108
>04_01_0267 + 3584117-3584922,3585331-3585361
Length = 278
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 530 IKLSMDPDCSVCCTDMIS 477
I+LS+ P C++CCT +S
Sbjct: 254 IELSLSPSCTICCTPRLS 271
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 618 CEYIYYTSLSVDNSRTLFVHVPDTNVYSSEQ 710
C+ I S SV + FVH+PDT+ + S+Q
Sbjct: 320 CKAIVDISCSVAKVQFKFVHLPDTDFWGSDQ 350
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 571 KTPPGL*APKMLADICVSTSTTHRC 645
+ PPG AP ++ D+C S HRC
Sbjct: 20 RPPPG--APPLIEDVCFSLDAGHRC 42
>02_05_0978 -
33242938-33242988,33243729-33243911,33244458-33244520,
33244656-33246083
Length = 574
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 542 YSFNIKLSMDPDCSVCCTDMISRTFVKIIQTLIAFLM 432
Y FN+KL +DPD C + + + V + Q +I L+
Sbjct: 307 YFFNLKLQIDPDAFACAIEKLPQ-LVSLHQNIILKLV 342
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +3
Query: 393 SSIANELTLEVQAHKKGYQRLDYFDKCPANHVCTADGAVRIHTKLNVERICKEFNDASPE 572
S IA + LE + G +D ++ P A+ + H + R C++ ++ P+
Sbjct: 309 SVIAKLMGLEEAPNATGVLTVDSYE--PERSPRPAEDTQKEHPVPSPRRFCQDPRESLPK 366
Query: 573 DSTRAVSSKDAGRYLCE 623
D + A+ +K + R L E
Sbjct: 367 DESPAMKTKPSPRILTE 383
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 246 KLLDKQEIENKHRCELVLIEIPVTYEN-VDEFVPAL-WETHTPKLMIHVGVSSIANELTL 419
K++ K++ ++KH +L + ++P YE+ V VP+ THT IH ++ ++
Sbjct: 713 KMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNTHTMDRSIHSSETNRMDDCLP 772
Query: 420 EVQAHKKG 443
++ A G
Sbjct: 773 DINASCNG 780
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 522 KLNVERICKEFNDAS-PEDSTRAVSSKDAGRYLCEYIYYTSLSVDNSRTLFVHVPDTNV 695
K + +++C + D PE S AVS+KD + + YYT+ S D + D V
Sbjct: 161 KSSQDKVCHDMLDTHVPEKSMSAVSNKDETSSV-HFGYYTNRSDDEEEECSAYCSDRQV 218
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 28.3 bits (60), Expect = 7.5
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Frame = +3
Query: 420 EVQAHKKGYQRLDYFDK-CPANHV--CTADGAVRIHTKLNVERICKEFNDASPEDSTRAV 590
E+ + + G+ LD F + C DGA I+ + +++ +FND S ++ +
Sbjct: 568 ELFSGRSGFVTLDLFAQLCRERRYPYIRLDGATSINKR---QKLVNQFNDPSRDEFVFLL 624
Query: 591 SSKDAGRYLCEYIYYTSLSVDNSRTLFVHVPDTN------VYSSEQTARGLQRIIE 740
SSK G C L++ L + PD N VY + + GLQ++I+
Sbjct: 625 SSKAGG---C------GLNLVGGNRLILFDPDWNPANDKQVYQRQMSKEGLQKVIQ 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,914,552
Number of Sequences: 37544
Number of extensions: 441360
Number of successful extensions: 1086
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -