Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17l06f
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 250 6e-67
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 128 3e-30
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 125 3e-29
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 123 2e-28
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 116 1e-26
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 100 2e-21
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 35 0.053
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 29 4.6
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 29 4.6
Z74043-12|CAA98548.1| 503|Caenorhabditis elegans Hypothetical p... 28 6.0
Z74040-7|CAA98515.1| 503|Caenorhabditis elegans Hypothetical pr... 28 6.0
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 28 6.0
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 250 bits (613), Expect = 6e-67
Identities = 115/208 (55%), Positives = 157/208 (75%)
Frame = +3
Query: 96 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQ 275
MFRNQYD DVTVWSPQGRLHQVEYA+EA+K GSAT+G+K++ +AV++ALKRA ++LS++Q
Sbjct: 1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ 60
Query: 276 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 455
KK+ ID H G+SI+GL +D R+L+RY++TEC + R+ + +P+ +L S+ K+Q T
Sbjct: 61 KKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANT 120
Query: 456 QRYDKRPLGVGLLVAGYDDQGPHIYQTCPSANYFDCRAMAIGARSQSARTYLEKHLNTFM 635
Q Y +RP GVG+L+AGYD G HI QT PSA +IGARSQSARTYLE++++ F
Sbjct: 121 QYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFE 180
Query: 636 DCDLQELVAHGLRALRDTLPNEVDLNTK 719
++L+ H L ALRDTLP E +LN +
Sbjct: 181 KSTPEQLIVHALLALRDTLPAEENLNAQ 208
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 128 bits (310), Expect = 3e-30
Identities = 70/195 (35%), Positives = 112/195 (57%), Gaps = 6/195 (3%)
Frame = +3
Query: 105 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQ--K 278
N+YD +T++SP G L QVEYA EAVK GS +G++ KD V+ K+++ L + +
Sbjct: 2 NRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIR 61
Query: 279 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 458
KI ID+H+ ++ +GL+ADAR+L R EC +++ + + P+ V + + N Q TQ
Sbjct: 62 KIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQ 121
Query: 459 RYDKRPLGVGLLVAGYDDQG-PHIYQTCPSANYFDCRAMAIGARSQSARTYLEKHL---N 626
+RP G+ +L+ G+D G P +++T PS Y++ A A G + R YLE+ N
Sbjct: 122 SPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEEN 181
Query: 627 TFMDCDLQELVAHGL 671
T + +LV L
Sbjct: 182 TVDEATTLKLVVKSL 196
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 125 bits (302), Expect = 3e-29
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 6/178 (3%)
Frame = +3
Query: 102 RNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQ-- 275
R++YD V +SP+GRL QVEYA+EAVKLGS +IG+K + +L A KR+ S+L
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAI 64
Query: 276 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGN-KMQI- 449
+KI +D+HIG++ +GL AD+R L + E N ++++ + V + SV N +Q
Sbjct: 65 EKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFG 124
Query: 450 --CTQRYDKRPLGVGLLVAGYDDQGPHIYQTCPSANYFDCRAMAIGARSQSARTYLEK 617
+ RP GV +L AG D +G ++ PS + DC+A +IGA S A L++
Sbjct: 125 DDDVKASMSRPFGVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKE 182
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 123 bits (296), Expect = 2e-28
Identities = 70/199 (35%), Positives = 117/199 (58%), Gaps = 4/199 (2%)
Frame = +3
Query: 108 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL---SAYQK 278
+YDS T++SP+GRL+QVEYAMEA+ +G+ + + V+ A ++ V +L S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTE 63
Query: 279 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 458
K+ + ++I +++G+TADA +L ++R ++R S+ MPV +L+ ++ N+ Q TQ
Sbjct: 64 KVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQ 123
Query: 459 RYDKRPLGVGLLVAGYDDQ-GPHIYQTCPSANYFDCRAMAIGARSQSARTYLEKHLNTFM 635
KRP GV LL G+D G +YQ+ PS NY +A IG+ Q+A T L++ +
Sbjct: 124 IGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQE---YK 180
Query: 636 DCDLQELVAHGLRALRDTL 692
+L+E ++ L TL
Sbjct: 181 SPNLEEAKQLAIKVLWKTL 199
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 116 bits (280), Expect = 1e-26
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 2/182 (1%)
Frame = +3
Query: 105 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQKKI 284
+ Y +T +SP G+L Q+EYA+ AVK G ++GL+ KD V++A + S L+ Q K+
Sbjct: 3 DHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKD-GVVLATENVGSVLTDDQPKV 61
Query: 285 IPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRY 464
I +HIG SG+ D R+L + R + + + MP +L++ + MQ TQ
Sbjct: 62 EQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSG 121
Query: 465 DKRPLGVGLLVAGYDDQ--GPHIYQTCPSANYFDCRAMAIGARSQSARTYLEKHLNTFMD 638
RP G LL+AG+D P ++Q PS YF +A A+G +A+T+LEK + ++
Sbjct: 122 GVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALE 181
Query: 639 CD 644
D
Sbjct: 182 LD 183
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 99.5 bits (237), Expect = 2e-21
Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 4/208 (1%)
Frame = +3
Query: 111 YDSDVTVWSPQGRLHQVEYAMEAVKLGSAT-IGLKNKDYAVLIALKRAVSELSAYQ--KK 281
+D +T++SP+GR++QVEYA +A+ + T + +K D AV+ KR L
Sbjct: 9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS 68
Query: 282 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 461
+ I + +G G+ DA+ + + E + +Y + MP L + + Q TQ
Sbjct: 69 VYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQN 128
Query: 462 YDKRPLGVGLLVAGYDDQ-GPHIYQTCPSANYFDCRAMAIGARSQSARTYLEKHLNTFMD 638
+ R LG LL YDD+ GP +Y+ P+ Y + +++G + A ++LEK + +
Sbjct: 129 AEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSE 188
Query: 639 CDLQELVAHGLRALRDTLPNEVDLNTKE 722
E + + AL+ +L +D+ +K+
Sbjct: 189 LTSTEAIELAIEALQTSL--GIDVRSKD 214
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 83.4 bits (197), Expect = 2e-16
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Frame = +3
Query: 111 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL--SAYQKKI 284
YD + +SP GR+ QVEYA +AV I ++ K+ V++A K S+L ++
Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRM 67
Query: 285 IPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRY 464
+++++G++++G D L Y E + + PMP+ + +SV + I T
Sbjct: 68 FNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGI 127
Query: 465 DKRPLGVGLLVAGYDDQ-GPHIYQTCPSANYFDCRAMAIGARSQSARTYLEKHLNTFMDC 641
RP G G ++ Q G ++ PS ++ +A A+G Q+A+ +EK +
Sbjct: 128 -SRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEK--LKIEEL 184
Query: 642 DLQELVAHGLRALRDTLPNEVDLNTK 719
D+ +LV R + D N +
Sbjct: 185 DVNQLVKEAARIIMVVRDENKDKNVQ 210
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 46.0 bits (104), Expect = 3e-05
Identities = 34/134 (25%), Positives = 59/134 (44%)
Frame = +3
Query: 279 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 458
KI+ I + + +++G AD + +R + C + + V N +
Sbjct: 104 KILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLY---- 159
Query: 459 RYDKRPLGVGLLVAGYDDQGPHIYQTCPSANYFDCRAMAIGARSQSARTYLEKHLNTFMD 638
Y + L VG +VAGYD +GP I++ + + ++G+ S +A L+ H M
Sbjct: 160 GYRGQGLSVGSMVAGYDKKGPQIFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKMT 219
Query: 639 CDLQELVAHGLRAL 680
D E GLRA+
Sbjct: 220 DD--EARKLGLRAI 231
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 35.1 bits (77), Expect = 0.053
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 477 LGVGLLVAGYDDQGPHIYQTCPSANYFDCRAMAIGARSQSARTYLEKHLNTFMDCD-LQE 653
+G LL+ G D GPH+Y + A G+ S +A T LE+ M D ++
Sbjct: 140 IGAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEK 199
Query: 654 LVAHGLRA 677
LV L A
Sbjct: 200 LVQRALEA 207
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 415 VSSRQLVTKCRFVPRDTTSDPWVWACWLLVMMTKDLIF-TRLVHQPTTLIVVRWQSEHVR 591
VS+ ++ + R +P D T D + + + +T ++F TR +PT V++++E
Sbjct: 276 VSANAIIVRMRGLPYDCT-DAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDA 334
Query: 592 SQRVLILRSISIHSWIVTFKS 654
Q +L R + +I FKS
Sbjct: 335 QQGLLKHRQVIGQRYIELFKS 355
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 415 VSSRQLVTKCRFVPRDTTSDPWVWACWLLVMMTKDLIF-TRLVHQPTTLIVVRWQSEHVR 591
VS+ ++ + R +P D T D + + + +T ++F TR +PT V++++E
Sbjct: 276 VSANAIIVRMRGLPYDCT-DAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDA 334
Query: 592 SQRVLILRSISIHSWIVTFKS 654
Q +L R + +I FKS
Sbjct: 335 QQGLLKHRQVIGQRYIELFKS 355
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 415 VSSRQLVTKCRFVPRDTTSDPWVWACWLLVMMTKDLIF-TRLVHQPTTLIVVRWQSEHVR 591
VS+ ++ + R +P D T D + + + +T ++F TR +PT V++++E
Sbjct: 276 VSANAIIVRMRGLPYDCT-DAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDA 334
Query: 592 SQRVLILRSISIHSWIVTFKS 654
Q +L R + +I FKS
Sbjct: 335 QQGLLKHRQVIGQRYIELFKS 355
>Z74043-12|CAA98548.1| 503|Caenorhabditis elegans Hypothetical
protein T19B10.1 protein.
Length = 503
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 355 TCAQSVSITDILMMLQCPLDVSS---RQLVTKCRFVPRDTTSDPWVWACWLL 501
T + ++ D+++ ++ ++S RQ V F DTT+ WACW L
Sbjct: 275 TSKRMMNFLDLMLSMEESNQLTSEDIRQEVDTFMFAGHDTTTSSTSWACWNL 326
>Z74040-7|CAA98515.1| 503|Caenorhabditis elegans Hypothetical
protein T19B10.1 protein.
Length = 503
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 355 TCAQSVSITDILMMLQCPLDVSS---RQLVTKCRFVPRDTTSDPWVWACWLL 501
T + ++ D+++ ++ ++S RQ V F DTT+ WACW L
Sbjct: 275 TSKRMMNFLDLMLSMEESNQLTSEDIRQEVDTFMFAGHDTTTSSTSWACWNL 326
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 240 TLSTPHSPYSSDQWLQNQVSQLPLHTPLDGDGLED 136
T+++ H+ + Q +QN++S +P H P G E+
Sbjct: 345 TITSVHAKSHNVQIVQNKISSVPSHLPTSNGGKEN 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,758
Number of Sequences: 27780
Number of extensions: 359741
Number of successful extensions: 980
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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