Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l05f
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261...    30   2.3  
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003...    29   3.1  
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801...    29   3.1  
03_06_0318 + 33103467-33104232,33104332-33105548                       29   5.4  

>07_03_0762 +
           21324550-21325414,21325606-21325746,21325993-21326177,
           21326200-21326410,21326526-21326769,21326853-21327003,
           21327089-21327439
          Length = 715

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 319 GKMSGLVNVARSGDQLVHYFAKMLRAQAKFKFTDLEFDFDYRVKVMNIGPTGRIRGSLSQ 498
           GK   ++N    G Q +H  +++       K +++  DFDY  K+ + G      G  S+
Sbjct: 480 GKRFKIINGIARGLQYLHEDSQLKIVHRDLKASNILLDFDYSPKISDFGLAKIFGGDQSE 539

Query: 499 FVIN 510
            V N
Sbjct: 540 DVTN 543


>07_03_0759 -
           21299502-21299807,21299889-21300039,21300151-21300388,
           21300729-21300939,21301018-21301133,21301388-21301519,
           21302179-21303073
          Length = 682

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 280 VLITYRASLGLTNGKMSGLVNVARSGDQLVHYFAKMLRAQAKFKFTDLEFDFDYRVKVMN 459
           +L     ++ L  GK   ++N    G Q +H  +++       K +++  DFDY  K+ +
Sbjct: 449 ILFDIDKNIELDWGKRFKIINGIAQGLQYLHEDSRLKIVHRDLKASNILLDFDYNPKISD 508

Query: 460 IG 465
            G
Sbjct: 509 FG 510


>03_02_0386 +
           8009884-8010133,8010274-8010338,8010545-8010658,
           8010736-8010895,8010975-8011093,8011209-8011635,
           8011834-8012057,8012863-8012973,8013056-8013188,
           8013259-8013365,8013430-8013444,8013482-8013571,
           8013855-8013917,8013973-8014053,8014136-8014208,
           8014312-8014367,8014460-8014554,8014649-8014683,
           8015449-8015525
          Length = 764

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 573 RW-CYSSEPFWKHSLRLVGDSFGKCV 647
           RW C +  P  KH+ R+V D  GKC+
Sbjct: 461 RWACVNFSPKRKHAARVVSDIIGKCI 486


>03_06_0318 + 33103467-33104232,33104332-33105548
          Length = 660

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = +1

Query: 115 QARNAVTRNWEGLGLTADINAYVDSMIDTLVPFMIKHD-----LDPLSIPDIEETFEVRP 279
           +   +++R    L L  D  AY+   +  L   + +       +DP  I D E+TF+V  
Sbjct: 477 ECETSMSRTARSLSLFEDEKAYISKHLKKLRQNLHQFSNNGKFIDPKKIDDKEDTFDVTN 536

Query: 280 VLITYR---ASLGLTNGKMSGLVNVARSG 357
               Y+       +TN + S + NV R+G
Sbjct: 537 SEDVYQDADEDSEMTNSENSEMTNVIRNG 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,886,560
Number of Sequences: 37544
Number of extensions: 413649
Number of successful extensions: 1024
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)