Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l05f
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical p...    28   6.3  
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    28   6.3  
AY728064-1|AAU43725.1|  277|Caenorhabditis elegans cadmium-induc...    28   6.3  
AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 318 ISKTQTRSIGNKDWSNFKSLFDVGNT*RIKVMFYHERNQCINHAVD 181
           + K QT++I  + W+   +   V +T +I V+FY++  +  + A+D
Sbjct: 520 LRKCQTQTIAPRSWNRISARIKVQSTEKIFVLFYNDAMEPKSIAID 565


>Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.11 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 511 VDLIIDFNNDEIHLQELYLTDVGVIRVSLSGNILYDWLVTPL-ANVFVRL 657
           V  I DF   E  L EL   D+ VI+ S+ GN L+   +TP  A VF +L
Sbjct: 190 VGAIGDFEPQE--LDELLHRDLKVIQDSIKGNFLFGDKITPADATVFGQL 237


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 591 HSNNTNVS*IKLLKMNLIVVEVDDEINIYNELRQRTPDATSRSDV--HYF 448
           H N+ ++  I+  K N  +V+    INI+N + +R+ DA   + +  +YF
Sbjct: 65  HPNDNSLICIRFKKTNRFLVDDPQTINIFNTIIRRSFDAMKLTQIGRNYF 114


>AY728064-1|AAU43725.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-4 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 511 VDLIIDFNNDEIHLQELYLTDVGVIRVSLSGNILYDWLVTPL-ANVFVRL 657
           V  I DF   E  L EL   D+ VI+ S+ GN L+   +TP  A VF +L
Sbjct: 190 VGAIGDFEPQE--LDELLHRDLKVIQDSIKGNFLFGDKITPADATVFGQL 237


>AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical
           protein Y47H9C.8 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 190 MIDTLVPFMIKHDLDPLSIPDIEETFEVRPVLITYRASLGLTNG 321
           ++ TL+ F+I   L  L  P++++TFE       Y  SLG TNG
Sbjct: 239 VVHTLLHFLIC--LAGLGAPELDQTFEEATDSSDYVESLGDTNG 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,121
Number of Sequences: 27780
Number of extensions: 374714
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)