Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l02f
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    31   0.12 
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   3.3  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   3.3  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.4  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   5.8  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   7.6  

>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 387 RISYLTVYQLNIQHIYHYQYMNMRLKRVNKKAVSCCKHAV 506
           R++  T Y  +  H Y Y  +  RLK VN  +   CKH +
Sbjct: 202 RVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 96  LYAGNIFIREASCIPRDLMSLILRSSK 176
           +Y+G+++  E +CIP +L+ L  R  K
Sbjct: 155 IYSGDVYSAETTCIPIELVGLRYRGWK 181


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 166 DLRSRRDTY*NPEKHQANKIRSD 234
           D+ SRRD + +   H++NKIR D
Sbjct: 42  DVSSRRDRHDSFRSHESNKIRRD 64


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 226 ESCWLDVSQDFNRYLVYFEDRRIKLIK 146
           E CW D+  DF    +Y+  R I  +K
Sbjct: 448 EKCWSDMFHDFQNQALYWISRYISTMK 474


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 549 TWAPLDKSFCFDFN 508
           TW  LDKSFCF ++
Sbjct: 14  TWKILDKSFCFKYS 27


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 247 WWKVNRNESCWLDVSQDFNRYLVYFEDRRIKLIKSR 140
           W+ VN  ES W D+  ++   LV   +++ K + S+
Sbjct: 89  WYNVNTRESVW-DIPDEYKAALVDEPEQQKKALSSK 123


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 512 LTYSVFTTTYCFFIYSFKAHVHVLIMI 432
           + YS +    C++IYS+K   H  I +
Sbjct: 457 ILYSFYALLCCYYIYSYKLIPHSSIFV 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,236
Number of Sequences: 5004
Number of extensions: 47688
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)