Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17l02f
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    29   4.5  
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615...    28   6.0  
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246...    28   6.0  
05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695...    28   6.0  

>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 213 SQQDSFRLTFHHAKRALRET*PEHAGKCGTEHL 311
           +++   R +F+   R L ++ P+H G  GT HL
Sbjct: 481 NKRSDIRESFNEKNRILMKSAPDHRGPAGTSHL 513


>07_03_1779 -
           29458889-29459249,29461107-29461283,29461374-29461573,
           29461673-29462752
          Length = 605

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 256 LFAWWKVNRNESCWLDVSQ-DFNRYLVYFEDRRIKLIKSRG 137
           + AW  + ++ + W  V    FN Y+ +  + +IK++KSRG
Sbjct: 391 VIAWRSIAKHAANWKGVHYLVFNTYIWWLNNFQIKVLKSRG 431


>06_03_1403 +
           29923503-29923821,29924269-29924405,29924495-29924647,
           29924690-29925280,29925523-29925597,29925901-29926169,
           29927238-29927331
          Length = 545

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -1

Query: 232 RNESCWLDVSQDFNRYLVYFEDRRIKLIKSRGMHDASRMNMFPAYND 92
           +NE  W DV   +N        R  K IK R  H A RM     YND
Sbjct: 170 KNEQYWTDVEATYNETTPSHRRRNAKQIKDR-FHKA-RMIYTSGYND 214


>05_06_0032 -
           25067996-25068156,25068746-25068815,25069385-25069532,
           25069611-25069726,25069799-25069877,25069960-25070030,
           25070139-25070348,25070445-25070453,25070824-25070968,
           25071297-25071332,25071428-25071494,25071591-25071624
          Length = 381

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  LLIIFTIVLTCIVVRGKH-IHPRSIVHSTGLDEF 157
           L+++FT+VLTC  +  +H + P   VH    D F
Sbjct: 98  LILLFTLVLTCSGLSNQHTMTPEIAVHGFPADNF 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,406,092
Number of Sequences: 37544
Number of extensions: 263016
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)