Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17k24f
(419 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 25 0.46
DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein ... 23 1.8
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 23 1.8
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 3.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 4.3
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 4.3
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 21 5.6
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 5.6
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 5.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 9.9
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 20 9.9
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 24.6 bits (51), Expect = 0.46
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 54 ILGISNVEASTGYDFGDFLATVLGIGIAVVGILACLG 164
ILG+S + TG F VLG I V+ C G
Sbjct: 37 ILGVSK-QIETGLAFPSITLIVLGSIIFVISFFGCCG 72
Score = 20.2 bits (40), Expect = 9.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 102 DFLATVLGIGIAVVGIL 152
+F+ V G+GI +G+L
Sbjct: 16 NFVFAVCGLGILTLGVL 32
>DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein 5
protein.
Length = 104
Score = 22.6 bits (46), Expect = 1.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 183 PFAVRNYPNRLKFLQRLYRYLK 118
PF +NYP + + R Y+ +K
Sbjct: 81 PFMQQNYPYEWQLILRRYKIMK 102
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.6 bits (46), Expect = 1.8
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 166 LPK-QAKIPTTAIPIPKTVAKKSPKS*P 86
LPK + IP T +PK KSPK P
Sbjct: 203 LPKWKDGIPVTLTTVPKHSKTKSPKLRP 230
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.8 bits (44), Expect = 3.2
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = -2
Query: 274 RYFFPYSFIL 245
R+FFP+SF++
Sbjct: 364 RFFFPFSFLI 373
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 4.3
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +1
Query: 160 WVITHGKGRETSLYRFIKTCHLVSAHASLE*MNMEKNISFHPIYLSSIQETSKLYRIS 333
W H G + Y T H +AH +L+ + + ++ + H + T +LY S
Sbjct: 1424 WKSGHNGGASLTGY----TLHYRTAHGNLDELQLSRHATSHELKGLLCGNTYQLYLTS 1477
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 4.3
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +1
Query: 160 WVITHGKGRETSLYRFIKTCHLVSAHASLE*MNMEKNISFHPIYLSSIQETSKLYRIS 333
W H G + Y T H +AH +L+ + + ++ + H + T +LY S
Sbjct: 1420 WKSGHNGGASLTGY----TLHYRTAHGNLDELQLSRHATSHELKGLLCGNTYQLYLTS 1473
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 21.0 bits (42), Expect = 5.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 271 ISFHPIYLSSIQETSKLYR 327
I FH I L S+ S +YR
Sbjct: 459 IYFHSIVLGSLLNPSHMYR 477
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.0 bits (42), Expect = 5.6
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = +2
Query: 2 VLNYFQNVFPIVFPVIHNSWYKQCGSI 82
+LNY + ++ +++ +WY G I
Sbjct: 794 ILNYVGSEDSVIPRILYLTWYSSNGDI 820
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.0 bits (42), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 149 FSLFG*LRTAKGEKRVYIGSSKLAI 223
FSL T+KGE R+ G K AI
Sbjct: 395 FSLLRDAFTSKGEYRMSTGEMKEAI 419
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.2 bits (40), Expect = 9.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 7 KLLSKCISNCVSCYS 51
+LLS C+SN C S
Sbjct: 916 ELLSSCVSNDGGCSS 930
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 20.2 bits (40), Expect = 9.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -2
Query: 163 PKQAKIPTTAIPIPKTV 113
P+ +PT P P TV
Sbjct: 151 PRGGSLPTPVTPTPTTV 167
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,765
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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