Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k18r
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   1.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   8.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 472 ETHGGDDVTVFAWGVHHWMFSGL 404
           ++  G DVTV  WG  H  F+G+
Sbjct: 285 DSFAGSDVTVLGWG--HTSFNGM 305


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 373 PCGVARASARTDQRTSSGAHPMRTP*RHLRRASPSPAGR-PCASSSAV 513
           PCG AR  +  ++  S   HP R     LR    S  G  P  SS  +
Sbjct: 371 PCGDARIFSPHEENESVDKHPNRRARGQLRTKIESGEGTIPVKSSEGI 418


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 257 ALMPQGDEGGEQERKQRRSGHSGSRDADVA 346
           ++  +GD G      + + GHS  R  DVA
Sbjct: 577 SVQKKGDAGVYTCSARNKQGHSARRSGDVA 606


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 257 ALMPQGDEGGEQERKQRRSGHSGSRDADVA 346
           ++  +GD G      + + GHS  R  DVA
Sbjct: 577 SVQKKGDAGVYTCSARNKQGHSARRSGDVA 606


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 245 RLEKALMPQGDEGGEQERKQRRSGHSGSRDADVAARAHAGCP--RHAVWHVRLLVQTRE 415
           R E  ++ Q  +   +E +QR +    + +  V A+  A CP   + V    L+++ RE
Sbjct: 38  RFETLVVKQTKQSVLEEARQRANDAGLTEEEVVLAKTIAECPESENTVQKAALVLRLRE 96


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 656 RNGRARN---GAEFGQQQNAFHGALVHQRTRSKDPAERRSTRRNDRRQ 522
           R GR  N   G +    QNA +    +Q   +++  ++   R+ND RQ
Sbjct: 418 RCGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQ 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,942
Number of Sequences: 438
Number of extensions: 4868
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)