Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17k18f
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 31 1.0
10_01_0159 - 1807806-1809386 29 3.1
07_03_0293 + 16321539-16321893,16322020-16322207,16322881-163229... 29 3.1
03_02_0885 - 12169913-12170497,12170593-12170943 29 3.1
01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736 29 3.1
09_04_0351 + 16904075-16904738,16906285-16906366,16906533-169066... 29 5.4
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 29 5.4
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 29 5.4
08_02_0451 + 17297293-17297793,17297866-17298130,17298215-172984... 28 7.1
07_03_1229 + 25023537-25024094 28 7.1
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 28 7.1
03_04_0094 + 17264501-17265361 28 7.1
01_03_0068 - 12188426-12188767 28 7.1
01_01_0652 + 4975091-4975585 28 7.1
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 28 9.4
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724 28 9.4
01_06_0038 - 25819433-25820344 28 9.4
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 675 TSLSFSQFLLATLAKAPAGEACVMRVVVTIPTSLPS 568
TS F + + T + A AC+M V VTIPT + S
Sbjct: 216 TSCLFESYKMMTCSYADLDSACIMPVRVTIPTEMMS 251
>10_01_0159 - 1807806-1809386
Length = 526
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 523 GGSLA-VVPRHGGRHSEGALVGLHAAQVCXXXXXXXRDLSVH 401
GGSLA VV R+GGR EGA V +AA V L VH
Sbjct: 94 GGSLADVVARNGGRLDEGA-VRTYAADVLRGLDYLHGKLVVH 134
>07_03_0293 +
16321539-16321893,16322020-16322207,16322881-16322904,
16323497-16323550,16323854-16323944,16324715-16324815,
16324949-16324999,16326626-16326754,16327772-16327834,
16327928-16328171,16329628-16329776,16329855-16329944,
16330343-16330477,16330579-16330635,16331079-16331135,
16332299-16332336,16332532-16332601,16332971-16333207
Length = 710
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 603 RVVVTIPTSLPSASAHSAMDCTRLVTSVEASQSCLGTAAVTPRVPWLAFTPHRYAVAV 430
R ++ P S P A A+D V A+ + + AVT W +PHR +AV
Sbjct: 44 RAYISAPASGPDAYPSPALDAAAAAADVAAAIA--SSDAVTWAGVWALLSPHRARIAV 99
>03_02_0885 - 12169913-12170497,12170593-12170943
Length = 311
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -1
Query: 646 GDLGESARRRGMRDASGRHYTDISPVSQCPLGDGLHPLGDVGG--SLAVVPRHGGRHSEG 473
G +G+ + G ++G H QC GDG+ LG GG S+ R GR S G
Sbjct: 153 GGVGQKEKGGGTGSSAGVHGRQRRFRGQCEGGDGVDALGGEGGGSSVGKSNRGSGRISAG 212
>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
Length = 443
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -1
Query: 646 GDLGESARRRGMRDASGRHYTDISPVSQCPLGDGLHPLGDVGG--SLAVVPRHGGRHSEG 473
G +G+ + G ++G H QC GDG+ LG GG S+ R GR S G
Sbjct: 153 GGVGQKEKGGGTGSSAGVHGRQRRFRGQCEGGDGVDALGGEGGGSSVGKSNRGSGRISAG 212
>09_04_0351 +
16904075-16904738,16906285-16906366,16906533-16906697,
16906811-16906929,16906930-16907156
Length = 418
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 279 MPSPRNMTTFLAWPAACFAPAPSRSRLSIASCASRT 172
MP P + LA AA A AP+RS+ ++ SC+S T
Sbjct: 1 MPPPLLLLLLLA--AAAAAVAPARSKSTLESCSSST 34
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = +2
Query: 383 LAKTYCVNAQVPDSSCTATAYLCGVKANQGTL----GVTAAVPRHDCEASTDVTKRVQSI 550
L KTY A + +SC A A L G A+ L G + + D T S+
Sbjct: 269 LQKTYYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASL 328
Query: 551 AEWALADGRDVGIVTTTRITHASPAGAFAKVANRNWENDNDVK 679
+ +L D R GI+T + +V +R ++N +V+
Sbjct: 329 GKGSLTDIRH-GIITAPMLYAMEEFPQLHEVVDRGFDNPANVE 370
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 272 DGMSVPTLAAARTLLGQRRGQTGEEASLHFEQFPTLGLAKTYCVNAQVPDSSCTATAYLC 451
DGMS L A +G GEE E P + + +T+C+ + + CT C
Sbjct: 275 DGMSYEELLALGDRIGTEEYSDGEEVGKMIE--PFVRILQTFCIIGLLQFTICT-----C 327
Query: 452 GVKANQGT 475
V+ +GT
Sbjct: 328 AVRTWKGT 335
>08_02_0451 +
17297293-17297793,17297866-17298130,17298215-17298410,
17298437-17298864,17298923-17299200,17299298-17299588
Length = 652
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 617 SPAGAFAKVANRNWENDNDVKQEGHDVNRCPDIAHQLIKMAPGNKFK 757
+PA + +++ D+D K+EG DV +A + A GN+ K
Sbjct: 322 APASTDSDADDKDTVIDHDDKEEGEDVGETEVVAEKATDEAAGNRAK 368
>07_03_1229 + 25023537-25024094
Length = 185
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 541 AVHRRVGTG*RERCRYSDDHSHHACLS 621
A RR+ TG RCR D + HHACL+
Sbjct: 31 ACERRI-TGDGYRCRKCDFNIHHACLA 56
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 621 GEACVMRVVVTIPTSLPSASAHSAMDCT 538
G CV V PTSLP + H A C+
Sbjct: 411 GSPCVPHVGARHPTSLPFSDGHQATSCS 438
>03_04_0094 + 17264501-17265361
Length = 286
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 293 LAAARTLLGQRRGQTGEEASLHFEQFPTLGLAKTYCVNAQVPDSSCTATAYL 448
+ AAR LG+ G GE+AS + A + A +PD++ A A L
Sbjct: 42 IQAARAALGEAAGLIGEDASAAETLDADVWSALAHAGQAPIPDATVDAAAKL 93
>01_03_0068 - 12188426-12188767
Length = 113
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 460 GQPRHPRSDGRRAEARLRGFHRRHQAGAVHRRVGTG*RERCRYSDDHSHHA 612
G P + S GR + R RG RRH + G RCR D H A
Sbjct: 31 GSPPYGSSGGRHSGGR-RGLWRRHGSSLHAHGSIAGDNGRCRSGDGLKHEA 80
>01_01_0652 + 4975091-4975585
Length = 164
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 433 GDGIPVRREGQPRHPRSDGRRAEARLRGFHRRHQAGAVHR 552
G P RR + RH + G+R EA +G +R G R
Sbjct: 21 GGWAPTRRRPEGRHGEAAGKRREAAGKGGRQREARGGGRR 60
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 416 PDSSCTATAYLCGVKANQG 472
P++SC A A +CGV+ +QG
Sbjct: 1840 PENSCDARAAICGVQDSQG 1858
>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
Length = 353
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +2
Query: 518 STDVTKRVQSIAEWALADGRDVGIVTTTRITHASPAGAFAK 640
+++V +R + IA++ L DG ++GI + +T SPA A A+
Sbjct: 2 ASEVVRRRRRIADY-LNDGEELGIEGSPAVTPRSPALAAAR 41
>01_06_0038 - 25819433-25820344
Length = 303
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 451 RREGQPRHPRSDGRRAEARLRGFHRRHQAGAVHRRVGTG*R 573
+++ QP+ R GR A +RLR AG HR+VG G R
Sbjct: 75 QQQQQPQQQRRKGRTAVSRLRTALAAALAGR-HRQVGLGAR 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,406
Number of Sequences: 37544
Number of extensions: 353340
Number of successful extensions: 1471
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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