Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k18f
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AF000299-6|AAC47978.1|  297|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical ...    28   8.4  
AF026215-6|AAB71325.1|  516|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
            E03A3.6 protein.
          Length = 2089

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = -2

Query: 744  PGAILISW*AMSGQRLTSWPSCFTSLSFSQFLLA-TLAKAPAGEACVMRVVVTIPTSLPS 568
            PG+ L+S    SG + TS  +   S  F + L A T+  A A EA            LPS
Sbjct: 772  PGSTLLSPLTESGSKGTSPGTSAPSRPFPEHLQAQTMCVAQACEAEEEVEECEFVGILPS 831

Query: 567  ASAHSAMDCTRLVTSVEASQSCLGTAAVTPRVP 469
             +  + ++  ++VTS     S  G    TP+ P
Sbjct: 832  VTHDNVLETGQVVTSTTVHPSIKGQIIQTPQTP 864


>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
            E03A3.6 protein.
          Length = 2089

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = -2

Query: 744  PGAILISW*AMSGQRLTSWPSCFTSLSFSQFLLA-TLAKAPAGEACVMRVVVTIPTSLPS 568
            PG+ L+S    SG + TS  +   S  F + L A T+  A A EA            LPS
Sbjct: 772  PGSTLLSPLTESGSKGTSPGTSAPSRPFPEHLQAQTMCVAQACEAEEEVEECEFVGILPS 831

Query: 567  ASAHSAMDCTRLVTSVEASQSCLGTAAVTPRVP 469
             +  + ++  ++VTS     S  G    TP+ P
Sbjct: 832  VTHDNVLETGQVVTSTTVHPSIKGQIIQTPQTP 864


>AF000299-6|AAC47978.1|  297|Caenorhabditis elegans Hypothetical
           protein E03H12.2 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 353 LHFEQFPTLGLAKTYCVNAQVPDSSCT 433
           +HF+    L L +TYC+ A   DSSCT
Sbjct: 22  IHFDSCINLCLKETYCMLAFGNDSSCT 48


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 293 LAAARTLLGQRRGQTGEEASLHFEQFPTLGLAKTYCV 403
           LAAA+ LL   RGQ+ E+ +  +    TLGLA   CV
Sbjct: 34  LAAAKRLLDDSRGQSWEKLARKY----TLGLAAAPCV 66


>AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical
           protein F09G2.8b protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 584 GIVTTTRITHASPAGAFAKVANRNWENDNDVKQEGHDVNRCPDIAHQLIKM 736
           GI+ T  I  +  A  +   AN +W++ ++VK+ G     CP +A  L K+
Sbjct: 274 GIIHTKFIL-SDIATLYIGSANMDWKSLSEVKEVGVVFQECPCVASDLYKI 323


>AF026215-6|AAB71325.1|  516|Caenorhabditis elegans Hypothetical
           protein F09G2.8 protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 584 GIVTTTRITHASPAGAFAKVANRNWENDNDVKQEGHDVNRCPDIAHQLIKM 736
           GI+ T  I  +  A  +   AN +W++ ++VK+ G     CP +A  L K+
Sbjct: 236 GIIHTKFIL-SDIATLYIGSANMDWKSLSEVKEVGVVFQECPCVASDLYKI 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,094,114
Number of Sequences: 27780
Number of extensions: 233591
Number of successful extensions: 769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)