Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17k10f
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 29 0.53
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 29 0.70
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 27 2.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 2.8
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 3.8
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 5.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 6.6
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 6.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 6.6
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.7
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 202 VFGKAIFILQQFHELITSFSISFSCL 125
+F K IF LQ FHE SF+CL
Sbjct: 452 IFEKMIFTLQHFHEDFLRLQNSFNCL 477
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 107 LDNTLIQTRKGDTKACNKLVELLQNEYGLPKDMAVESGSTFLRAFRARPD 256
+ N+ + D + + L E LQNE G+P +++ S +L A + D
Sbjct: 162 ISNSQLSDHNPDFQVLSDLRESLQNELGIPLQLSMGMSSDYLLAIKYGSD 211
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = -1
Query: 428 QLNAMFRVNVLRHL*EPNTEILALAIRSTHFWRCVCSFLVSSYAIDALAIRAMRTIRHQV 249
QL + +L+HL P A+ I T+ +CS++ +S + A T H +
Sbjct: 4 QLGLQRMLQLLKHLGNPQESFCAVQIAGTNGKGSICSYIYTS-LLQAAIKTGRYTSPHFL 62
Query: 248 EP 243
EP
Sbjct: 63 EP 64
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 207 AMSLGRPYSFCSSSTSLLQALVSPFLVC-IKVLSKSNSIAETS 82
+MSLGRP++ + T++ + P VC I++ S+SN I + S
Sbjct: 379 SMSLGRPFAISNDQTNVHE----PSNVCDIQISSQSNCIPDPS 417
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 420 RNVSSKCITSFVRAKYRNLSLSHSVDTLLAMCL*FFGKQLRHRCAGHSCNAYDSSSGR 247
RN++ + TS+VRA +LS S+ + + L K R A + +SS R
Sbjct: 616 RNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKSFALREAPGKISGANSSKPR 673
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 14 YSLILHFAA*QIMANSGYFDENSDVSAILFDLDNTLIQTRKGDTKACNKLVE 169
+ + H A + N G+F +S VS +LD+ + +G A KL E
Sbjct: 333 HQIFAHTAFSNLFGNVGFFTGDSIVSKNPIELDDEDYEFMQGFESAAGKLAE 384
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 195 GRPYSFCSSSTSLLQALVS 139
G Y FCSS TSL+ L++
Sbjct: 561 GTSYDFCSSYTSLMDRLIN 579
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 308 LPKNYKHIAKSVSTE 352
LPKNY ++AKS S E
Sbjct: 345 LPKNYAYVAKSTSPE 359
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 194 PKDMAVESGSTFLRAFRARPDDE 262
P+D +E F+ AF A PD+E
Sbjct: 1161 PQDTVIEEDKDFVEAFFAIPDEE 1183
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 675 IVELIKHFKEIHNSAQHSAKLYL 743
++ +I+H KEIH SAKL L
Sbjct: 56 LIMIIQHLKEIHYLISASAKLLL 78
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 204 MSLGRPYSFCSSSTSLLQALVSPFLVCIKVLSK 106
M L RP F S+ L ++ SPFL C+ +SK
Sbjct: 505 MGLSRPGPFHSALRDLKNSIKSPFL-CLIYISK 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,731
Number of Sequences: 5004
Number of extensions: 59629
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -