Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k10f
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical ...    29   3.5  
U58760-6|AAY55859.1|  159|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical
           protein Y67A10A.9 protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 143 TKACNKLVELLQNEYGLPKDMAVESGSTFLRAFRARPDDESYALHEWPAHLWRNCLPK 316
           +K+ ++LV +   E G   ++   +G  F R+F A    +S AL +W     +N + K
Sbjct: 241 SKSTSQLVSIELVENGDGSELLSSNGQNFKRSFSAVYRVDSSALRQWEKSYLKNAMEK 298


>U58760-6|AAY55859.1|  159|Caenorhabditis elegans Hypothetical
           protein C27A2.8 protein.
          Length = 159

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 421 FSCRSTSD*TRGAACITRRFDYICNMRKCHMEKVIPL 531
           +SCR  SD T  + C+T     +CN+   H  ++IPL
Sbjct: 116 YSCRHNSDTTTSSECVTTCQQPLCNI--SHGLELIPL 150


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +3

Query: 177 KMNMAFPKTWLWRAVPHS--YAPSGLDLM 257
           KMN   P    W  +PH   Y P+ LDL+
Sbjct: 714 KMNRQAPNAQFWNDIPHDEWYPPTPLDLL 742


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,335,221
Number of Sequences: 27780
Number of extensions: 334331
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)