Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k07f
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    45   1e-05
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    29   0.57 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   7.1  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   7.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.4  

>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 30/114 (26%), Positives = 47/114 (41%)
 Frame = +1

Query: 277 QKEYFTLSRTQRXXXXXXXXXXXXXXXXXXXXYIPVLLLQARKFAXXXXXXXXXXXXXXX 456
           Q   F+LSR +R                      PVL+L+ RKF                
Sbjct: 56  QSSEFSLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAVLGFA 115

Query: 457 XXYGPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMA 618
              G  AH + + + ER   T  Y +TL+AT+   + ++ST  +IV  VL +++
Sbjct: 116 IVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHILS 169


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 486 VNVLKGKSSYNINLQYNFDSDIILCLTSSKYTVDHSMCCLTSHGIVLDDDGVYTRRIIGH 665
           V+ L  +S + +  ++   SD  L  T+    ++ ++C     GI   D+G Y   +IG 
Sbjct: 390 VSGLPLRSFHQVGRRFRPGSDFTLATTNDTALLEATLCLSPGTGIANTDNGAYDIYMIGD 449

Query: 666 E 668
           E
Sbjct: 450 E 450


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 707 HCRFNTKILCSICLK 751
           HCR   KI+C  CLK
Sbjct: 81  HCRICGKIICKYCLK 95


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 40  CNPNCFEGVNYIYPY-IYTQ*VQRNK-KMANLKSDLDQYLLQNESRRSYKFSLPSFS 204
           C  + F+G+NY+  Y  YT+  +  +  +  L+S  D+ LL  +     + SL S +
Sbjct: 584 CIDDSFDGINYVLSYEDYTKETEHERLVVTRLRSVWDRVLLLEQFTPENQLSLRSMA 640


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 657  IGHEVLWKHVQIISFKHIADLTRKY 731
            I H+  WK  QIIS   IA L   Y
Sbjct: 1212 ISHQSFWKLDQIISTNSIAPLLHSY 1236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,552
Number of Sequences: 5004
Number of extensions: 61623
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)