Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k07f
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-12|CAA93859.1|  235|Caenorhabditis elegans Hypothetical p...    59   4e-09
Z68318-9|CAA92698.1|  235|Caenorhabditis elegans Hypothetical pr...    59   4e-09
Z79695-3|CAE17789.1|  162|Caenorhabditis elegans Hypothetical pr...    41   0.001

>Z70034-12|CAA93859.1|  235|Caenorhabditis elegans Hypothetical
           protein C18E9.10 protein.
          Length = 235

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 36/113 (31%), Positives = 49/113 (43%)
 Frame = +1

Query: 289 FTLSRTQRXXXXXXXXXXXXXXXXXXXXYIPVLLLQARKFAXXXXXXXXXXXXXXXXXYG 468
           F ++RTQR                     IPV+L+  RKFA                  G
Sbjct: 88  FGMTRTQRIIAFFMCIIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLLLLSFAFLLG 147

Query: 469 PWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 627
           P ++L  M S +R L T  Y   L ATLY +L L+ST +T++ A+ Q   L W
Sbjct: 148 PKSYLTHMASPQRRLVTVSYLSALFATLYSSLWLKSTIFTLIAAIFQGFTLVW 200


>Z68318-9|CAA92698.1|  235|Caenorhabditis elegans Hypothetical
           protein C18E9.10 protein.
          Length = 235

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 36/113 (31%), Positives = 49/113 (43%)
 Frame = +1

Query: 289 FTLSRTQRXXXXXXXXXXXXXXXXXXXXYIPVLLLQARKFAXXXXXXXXXXXXXXXXXYG 468
           F ++RTQR                     IPV+L+  RKFA                  G
Sbjct: 88  FGMTRTQRIIAFFMCIIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLLLLSFAFLLG 147

Query: 469 PWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 627
           P ++L  M S +R L T  Y   L ATLY +L L+ST +T++ A+ Q   L W
Sbjct: 148 PKSYLTHMASPQRRLVTVSYLSALFATLYSSLWLKSTIFTLIAAIFQGFTLVW 200


>Z79695-3|CAE17789.1|  162|Caenorhabditis elegans Hypothetical
           protein F27D4.7 protein.
          Length = 162

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +1

Query: 466 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 627
           GP   +K MF K R + +S+Y + +  TL   L L+++   I+C   Q +A+ W
Sbjct: 91  GPIGQIKKMFDKSRWIASSMYILFIFLTLLSGLVLKNSLLAIICTAGQYIAMAW 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,018
Number of Sequences: 27780
Number of extensions: 342838
Number of successful extensions: 827
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)