Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k03f
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.7  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    25   3.7  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    24   4.8  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    24   6.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    23   8.5  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 311  FDALMMNQKVAIVPSQVTNVAGYIRVSTH*LSIRPGIEPERRP 183
            F+A     ++ I+PS+ TN+   +R   H    +  ++P + P
Sbjct: 3942 FEARSCLNQIKILPSRFTNIEDTLRFLRHDEEAKRFLDPFKNP 3984


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  IC*SFVLCLVNLLIICSVSCCRNI*LFLVLFRL 155
           +C  F   L+ +L ICS+ C   +  FLV F L
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVL 33


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 126 YYDNTIHYRLLTN 88
           YYDNTI +R++ N
Sbjct: 490 YYDNTIFHRIIKN 502


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 228 PLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIYYDNTIHYR 100
           P    TS +  + A   K+     +++ I E V  YD++ H R
Sbjct: 97  PHKKSTSTSTRKRARSSKKKATDSVSDKIDESVASYDSSTHLR 139


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 134 ISRIVSFNLPTSLCLWPDAVRV 199
           I + + FN PTS+ LW +AV +
Sbjct: 362 IKKALEFN-PTSVSLWKEAVNL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,263
Number of Sequences: 5004
Number of extensions: 22680
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)