Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k03f
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0756 - 27817846-27819224,27819961-27820093,27820440-278205...    28   1.4  
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    28   1.8  
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089           27   2.4  
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361...    27   3.2  
12_02_0226 + 15887835-15891188                                         26   5.6  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    26   5.6  
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    26   7.4  
03_03_0245 + 15782712-15783066,15783385-15783611                       25   9.7  

>04_04_0756 -
           27817846-27819224,27819961-27820093,27820440-27820519,
           27821378-27821609
          Length = 607

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 222 LVG*YTNITRYIGDLRRNNRNLLIHH 299
           L G Y NIT  I D + NN +L++ H
Sbjct: 85  LYGLYVNITLIIQDAKGNNNDLILQH 110


>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 306 CADDESEGCDCSVAGHQCSGLYSCIN 229
           C DD    C   V GH   GL +C+N
Sbjct: 911 CLDDGGVACLAHVHGHVLPGLSNCVN 936


>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
          Length = 495

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = -1

Query: 306 CADDESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVI 127
           CA    E   CS A   CSG   C   L   T    +    G K   VG+L   I  + +
Sbjct: 364 CACHVEESSSCSCAALVCSGSLDCDVKLWRVTV---SEAIKGSKVHHVGRLLGLIFHLFV 420

Query: 126 YYDNTIHYR 100
           +  N + ++
Sbjct: 421 WLSNFVEFK 429


>09_04_0752 +
           19933604-19934278,19934679-19935387,19936118-19936161,
           19936607-19936704,19937056-19937160,19937694-19937757,
           19938316-19938885
          Length = 754

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 232 QPTNCRYVQESNPNGVRPQA 173
           QPTN RYV+E+   GVR +A
Sbjct: 398 QPTNARYVEEAWRVGVRARA 417


>12_02_0226 + 15887835-15891188
          Length = 1117

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 220 CRYVQESNPNGVRPQAKRCR*IKRNNTRNSYILRQHDTLQIINK 89
           CR  +E   NG+ P       +   + RN +I    D  + IN+
Sbjct: 505 CRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAFRNINE 548


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 228  PLTVDTSRNRTRTASGHKQSDVGKLNETIREIVI 127
            P   DTSR  TRTAS   +  V    + IRE+ I
Sbjct: 1701 PTAEDTSRQPTRTASTPIEKAVPDGRDAIRELKI 1734


>08_01_0704 +
           6219530-6219609,6221595-6222243,6222339-6222437,
           6222521-6222616,6222750-6222848,6222929-6223027,
           6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 157 IKRNNTRNSYILRQHDTLQIINKLTRHKTND*QIYE 50
           + ++NT N + LRQ DT+  I  +    T+  Q+ +
Sbjct: 783 VNQDNTANQFHLRQADTVNRIQTMQESTTDQPQLIQ 818


>03_03_0245 + 15782712-15783066,15783385-15783611
          Length = 193

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 300 DDESEGCDCSVAG 262
           D E EGCDC V G
Sbjct: 110 DGEHEGCDCGVPG 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,330,455
Number of Sequences: 37544
Number of extensions: 126818
Number of successful extensions: 279
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)