Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k03f
         (318 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK055900-1|BAB71040.1|  181|Homo sapiens protein ( Homo sapiens ...    31   0.98 
AL137287-1|CAB70679.1| 1397|Homo sapiens hypothetical protein pr...    27   9.1  
AK023306-1|BAB14517.1|  542|Homo sapiens protein ( Homo sapiens ...    27   9.1  
AF117888-1|AAD49195.1| 2548|Homo sapiens myosin-IXa protein.           27   9.1  

>AK055900-1|BAB71040.1|  181|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31338 fis, clone MAMGL1000184. ).
          Length = 181

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 3   PQSLVLIARFSLIIVISYIC*SFVLCLVNLLIICSVSCCRNI*LFLV 143
           PQSL ++   + + V  ++C    +C+  L+ +C+ +C R    FL+
Sbjct: 121 PQSLTVVCMCACMCVCVHVCACVYVCMCVLVCMCACACMRAHRYFLM 167


>AL137287-1|CAB70679.1| 1397|Homo sapiens hypothetical protein
           protein.
          Length = 1397

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 229 PTNCRYVQESNPNGVRPQAKRCR*IKRNNTRNSYILRQHDTLQIINKLTRHKTND 65
           P +CR   + N     P+AKR R +K +N     +  Q+D++QII  ++  K+ D
Sbjct: 664 PGSCRKEFKENKEP-SPKAKRKRSVKISNVALDSMHWQNDSVQIIASVSDLKSMD 717


>AK023306-1|BAB14517.1|  542|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13244 fis, clone OVARC1000679, highly similar to
           Homo sapiens myosin-IXa mRNA. ).
          Length = 542

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 229 PTNCRYVQESNPNGVRPQAKRCR*IKRNNTRNSYILRQHDTLQIINKLTRHKTND 65
           P +CR   + N     P+AKR R +K +N     +  Q+D++QII  ++  K+ D
Sbjct: 376 PGSCRKEFKENKEP-SPKAKRKRSVKISNVALDSMHWQNDSVQIIASVSDLKSMD 429


>AF117888-1|AAD49195.1| 2548|Homo sapiens myosin-IXa protein.
          Length = 2548

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 229  PTNCRYVQESNPNGVRPQAKRCR*IKRNNTRNSYILRQHDTLQIINKLTRHKTND 65
            P +CR   + N     P+AKR R +K +N     +  Q+D++QII  ++  K+ D
Sbjct: 1815 PGSCRKEFKENKEP-SPKAKRKRSVKISNVALDSMHWQNDSVQIIASVSDLKSMD 1868


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,516,283
Number of Sequences: 237096
Number of extensions: 746976
Number of successful extensions: 1895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)