Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17k03f
(318 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051598-1|AAK93022.1| 1019|Drosophila melanogaster GH23906p pro... 28 2.3
BT001542-1|AAN71297.1| 712|Drosophila melanogaster RE10019p pro... 28 3.0
BT001537-1|AAN71292.1| 625|Drosophila melanogaster RE08405p pro... 28 3.0
AY118663-1|AAM50032.1| 625|Drosophila melanogaster SD10416p pro... 28 3.0
AE014297-1600|AAN14336.1| 550|Drosophila melanogaster CG7381-PC... 28 3.0
AE014297-1599|AAN14335.1| 625|Drosophila melanogaster CG7381-PB... 28 3.0
AE014297-1598|AAF54878.3| 712|Drosophila melanogaster CG7381-PA... 28 3.0
AY060814-1|AAL28362.1| 172|Drosophila melanogaster GH28366p pro... 27 3.9
AE013599-743|AAF59023.2| 172|Drosophila melanogaster CG8248-PA ... 27 3.9
AY089609-1|AAL90347.1| 754|Drosophila melanogaster RE22432p pro... 27 6.9
AL050231-6|CAB43325.1| 755|Drosophila melanogaster EG:BACR37P7.... 27 6.9
AE014298-15|AAF45492.5| 840|Drosophila melanogaster CG3114-PB, ... 27 6.9
X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase... 26 9.1
AY089505-1|AAL90243.1| 343|Drosophila melanogaster GH13901p pro... 26 9.1
AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p pro... 26 9.1
AE014297-3952|AAF56594.1| 195|Drosophila melanogaster CG14237-P... 26 9.1
AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA p... 26 9.1
AE013599-2382|AAF57926.1| 343|Drosophila melanogaster CG9010-PA... 26 9.1
>AY051598-1|AAK93022.1| 1019|Drosophila melanogaster GH23906p
protein.
Length = 1019
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 245 NPLHW*PATEQSQPSDSSSAH 307
NP W P T+QSQP S H
Sbjct: 58 NPAVWKPPTQQSQPPQQSQQH 78
>BT001542-1|AAN71297.1| 712|Drosophila melanogaster RE10019p
protein.
Length = 712
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 303 ADDESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIY 124
AD++ G C+ G CSGL I + R +G +++G++ E+ E
Sbjct: 365 ADEKKYGSSCTDNGKTCSGLPHSICSKNICLCRQGYYARNGKCFAELGEIAESTDECEYE 424
Query: 123 YD 118
+D
Sbjct: 425 FD 426
>BT001537-1|AAN71292.1| 625|Drosophila melanogaster RE08405p
protein.
Length = 625
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 303 ADDESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIY 124
AD++ G C+ G CSGL I + R +G +++G++ E+ E
Sbjct: 278 ADEKKYGSSCTDNGKTCSGLPHSICSKNICLCRQGYYARNGKCFAELGEIAESTDECEYE 337
Query: 123 YD 118
+D
Sbjct: 338 FD 339
>AY118663-1|AAM50032.1| 625|Drosophila melanogaster SD10416p
protein.
Length = 625
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 303 ADDESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIY 124
AD++ G C+ G CSGL I + R +G +++G++ E+ E
Sbjct: 278 ADEKKYGSSCTDNGKTCSGLPHSICSKNICLCRQGYYARNGKCFAELGEIAESTDECEYE 337
Query: 123 YD 118
+D
Sbjct: 338 FD 339
>AE014297-1600|AAN14336.1| 550|Drosophila melanogaster CG7381-PC,
isoform C protein.
Length = 550
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 303 ADDESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIY 124
AD++ G C+ G CSGL I + R +G +++G++ E+ E
Sbjct: 203 ADEKKYGSSCTDNGKTCSGLPHSICSKNICLCRQGYYARNGKCFAELGEIAESTDECEYE 262
Query: 123 YD 118
+D
Sbjct: 263 FD 264
>AE014297-1599|AAN14335.1| 625|Drosophila melanogaster CG7381-PB,
isoform B protein.
Length = 625
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 303 ADDESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIY 124
AD++ G C+ G CSGL I + R +G +++G++ E+ E
Sbjct: 278 ADEKKYGSSCTDNGKTCSGLPHSICSKNICLCRQGYYARNGKCFAELGEIAESTDECEYE 337
Query: 123 YD 118
+D
Sbjct: 338 FD 339
>AE014297-1598|AAF54878.3| 712|Drosophila melanogaster CG7381-PA,
isoform A protein.
Length = 712
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 303 ADDESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIY 124
AD++ G C+ G CSGL I + R +G +++G++ E+ E
Sbjct: 365 ADEKKYGSSCTDNGKTCSGLPHSICSKNICLCRQGYYARNGKCFAELGEIAESTDECEYE 424
Query: 123 YD 118
+D
Sbjct: 425 FD 426
>AY060814-1|AAL28362.1| 172|Drosophila melanogaster GH28366p
protein.
Length = 172
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 207 RNRTRTASGHKQSDVGKLNETIREIVIYYDNTIHYRLLTN*RDTKQ 70
R ++ GHK+ +VGK + T I+ + Y LL D Q
Sbjct: 85 RRLIKSPEGHKKKEVGKKSNTAEPIIYLFALVFVYLLLKAASDINQ 130
>AE013599-743|AAF59023.2| 172|Drosophila melanogaster CG8248-PA
protein.
Length = 172
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 207 RNRTRTASGHKQSDVGKLNETIREIVIYYDNTIHYRLLTN*RDTKQ 70
R ++ GHK+ +VGK + T I+ + Y LL D Q
Sbjct: 85 RRLIKSPEGHKKKEVGKKSNTAEPIIYLFALVFVYLLLKAASDINQ 130
>AY089609-1|AAL90347.1| 754|Drosophila melanogaster RE22432p
protein.
Length = 754
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 237 CINPLTVDTSRNRTRTASGHKQSDVG 160
C+ P+ VDTS NR+ + + S +G
Sbjct: 577 CLAPMQVDTSINRSTSTAASSSSSLG 602
>AL050231-6|CAB43325.1| 755|Drosophila melanogaster
EG:BACR37P7.7,FBgn0005427;ewg protein.
Length = 755
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 237 CINPLTVDTSRNRTRTASGHKQSDVG 160
C+ P+ VDTS NR+ + + S +G
Sbjct: 577 CLAPMQVDTSINRSTSTAASSSSSLG 602
>AE014298-15|AAF45492.5| 840|Drosophila melanogaster CG3114-PB,
isoform B protein.
Length = 840
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 237 CINPLTVDTSRNRTRTASGHKQSDVG 160
C+ P+ VDTS NR+ + + S +G
Sbjct: 663 CLAPMQVDTSINRSTSTAASSSSSLG 688
>X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase 3,
second largestsubunit protein.
Length = 1129
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 231 NPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIYYDNTIHY 103
+P+ V S + R G SD+G L +T+RE N +HY
Sbjct: 188 HPICVKRSSWKDR---GQNFSDLGMLVQTVREDESSLSNVVHY 227
>AY089505-1|AAL90243.1| 343|Drosophila melanogaster GH13901p
protein.
Length = 343
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -1
Query: 297 DESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIYYD 118
D+ + C + + + G+ + V T N +R AS LN+ +++ +YD
Sbjct: 254 DDIKKCIKAASKCEMKGILGYVEEEVVSTDFNGSRFASVFDAKACIALNDNFVKLISWYD 313
Query: 117 NTIHY 103
N Y
Sbjct: 314 NETGY 318
>AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p
protein.
Length = 1129
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 231 NPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIYYDNTIHY 103
+P+ V S + R G SD+G L +T+RE N +HY
Sbjct: 188 HPICVKRSSWKDR---GQNFSDLGMLVQTVREDESSLSNVVHY 227
>AE014297-3952|AAF56594.1| 195|Drosophila melanogaster CG14237-PA
protein.
Length = 195
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 213 TSRNRTRTASGHKQSDVGKLNETIR 139
TSRNRTR SG + S V LN +R
Sbjct: 167 TSRNRTRNRSGRRVS-VRSLNRLLR 190
>AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA
protein.
Length = 1129
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 231 NPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIYYDNTIHY 103
+P+ V S + R G SD+G L +T+RE N +HY
Sbjct: 188 HPICVKRSSWKDR---GQNFSDLGMLVQTVREDESSLSNVVHY 227
>AE013599-2382|AAF57926.1| 343|Drosophila melanogaster CG9010-PA
protein.
Length = 343
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -1
Query: 297 DESEGCDCSVAGHQCSGLYSCINPLTVDTSRNRTRTASGHKQSDVGKLNETIREIVIYYD 118
D+ + C + + + G+ + V T N +R AS LN+ +++ +YD
Sbjct: 254 DDIKKCIKAASKCEMKGILGYVEEEVVSTDFNGSRFASVFDAKACIALNDNFVKLISWYD 313
Query: 117 NTIHY 103
N Y
Sbjct: 314 NETGY 318
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,564
Number of Sequences: 53049
Number of extensions: 238519
Number of successful extensions: 541
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 652945002
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -