Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17k01r
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    46   7e-06
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    29   0.90 
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    28   1.6  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    27   2.7  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.8  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   8.4  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    26   8.4  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 882

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 4/148 (2%)
 Frame = -3

Query: 896  RSESNYHVWDAAITGYTWLRNRLRHLPDQ--ATFDAYILELMETVINTYGFDAAANEPPT 723
            + E N+ V+   +     +++ LR       A     +LE+  T  ++ G++  AN+   
Sbjct: 608  KDEPNFVVFAEMLARLNGIKSTLRFESSDIIAAMKKLVLEVSATKAHSLGWEFKANDDHI 667

Query: 722  TSMARQTVLQFACNLGHTKCIQESYDKFREMRSG--KWVSPQIRRNVYMTGMREGDSSDF 549
                + TV  +A   G  K ++++  KF    SG    ++  +R  V+   +R G +  +
Sbjct: 668  IRQFKSTVYNYAGLFGDDKVVKDALSKFDAYASGNKSAINDNLRSAVFNIAIRYGGAKSW 727

Query: 548  EYLLNRFRQSNFANDQLEMLRGLGASKD 465
            + LL  + ++N    +   LR  G ++D
Sbjct: 728  DQLLEIYTKTNDPYVRNSCLRAFGVTED 755


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 377 LGNQENANTVLQFVKN--NIAAIRTAYIEDAPPTPVHTALS 261
           L +   A+T   FV+N  N+     + +ED+PPT  +T+LS
Sbjct: 42  LASSTKASTSTPFVENCSNLLCDLASIVEDSPPTLTNTSLS 82


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
 Frame = -3

Query: 422 EVRSHDKATSFNYALLGNQENANTVLQFVKNN--IAAIRTAYIEDAPPTPVHTALSNLAA 249
           E  S   +T  N +L G     N    F  N+  I      YI ++  + V + LS+   
Sbjct: 247 ETLSSTISTLSNDSLDGLSSQKNEFTGFNSNSEWIPNDTVDYICNSDASSVVSNLSDFED 306

Query: 248 YLDESGL--DEYETWLRSTQTNIPQYNSA-----LSAINSARSNIAWGTANAE 111
             D+ G+   EYE  +  T+ N P++ S+      SA + AR N   G  N +
Sbjct: 307 CFDQFGVYDKEYEKKIEKTKRNFPKFQSSATYPPFSAHHQARRNNPQGFRNVK 359


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 526 RKRFSKYSKSELSPSLMPVI*TLRRI*GLTHLPLLISLNLSYDSWMHFVCPRLQANC-ST 702
           +KR SK    EL+ +    +  +  I  +   P LISLNLS   ++   C RL A C + 
Sbjct: 316 KKRGSKLISLELTDTARIHVSVINAI--VDCCPNLISLNLSRIFYLDDECVRLLAGCRNL 373

Query: 703 VCLAILVVGG 732
           V L I   GG
Sbjct: 374 VSLKIESPGG 383


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +2

Query: 248 KQRD*TKLYALELVERLQCMPFL*QQYCSSR 340
           K+ D +K Y ++L +R +C+ ++ ++ CS++
Sbjct: 74  KEMDYSKDYFIDLSKRYKCLEYIVERLCSTK 104


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 288  WSVFNVCRSYSSNIVLHELENRVSVLLVTEQSVVEGSSFIV 410
            W +FNV R+YSS    H L+   ++L VT   V    S +V
Sbjct: 926  WHLFNVARTYSSE---HRLQR--AMLKVTSACVANKLSIVV 961


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 760 LMALMPRLMSLLQRVWQDKLYYNSLATL 677
           L  L+P L SLLQ   QD+  Y++LA +
Sbjct: 852 LKLLLPYLESLLQSGSQDRAIYDALAKI 879


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 248 YLDESGLDEYETWLRSTQTNIPQYNSALSAINSA 147
           +++E+G    + W  S   ++  Y S LS+I+++
Sbjct: 63  FMEETGTKREDIWFTSKLNDLSGYKSTLSSIDAS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,664
Number of Sequences: 5004
Number of extensions: 66020
Number of successful extensions: 227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)