Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17k01f
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 68 7e-12
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 60 2e-09
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 60 2e-09
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 58 5e-09
05_03_0476 + 14499226-14499381,14499726-14499750,14500388-145007... 31 1.2
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 30 2.2
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 30 2.2
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738... 30 2.2
06_01_0492 - 3531640-3531735,3531841-3531895,3532164-3532592,353... 29 2.8
04_03_0048 + 10157468-10158017,10158426-10158655 28 6.6
06_03_0370 - 19978462-19978800,19982435-19982591,19982683-199829... 28 8.7
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 68.1 bits (159), Expect = 7e-12
Identities = 39/99 (39%), Positives = 57/99 (57%)
Frame = +1
Query: 421 PQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKRGIWRGWYIDNDGTERIYATTHFQ 600
P+ L I NE L VG+ +L I + T+N+ G +R Y + +G ++ A T F+
Sbjct: 90 PEDEILIIRFNEVLPVGEG-TLVIAFKGTLND--KMHGFYRSVY-ELNGEKKNMAVTQFE 145
Query: 601 PYNARQAFPCWDEPLFKSVFKLHVSKPKSYTGTFSNTGV 717
P +AR+ FPCWDEP FK++FK+ + P S T SN V
Sbjct: 146 PADARRCFPCWDEPSFKAIFKITLEVP-SETVALSNMPV 183
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 60.1 bits (139), Expect = 2e-09
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 1/184 (0%)
Frame = +1
Query: 133 PIPITDNTTRSIEQVYRLPETVKPLEYDIYLDLYFAERTDRPFS-YDGRETIIIEAVAEG 309
P P + RLP P Y++ L R D + G +++++ V+
Sbjct: 3 PAPAPAGSADQFRGQARLPRFAAPRRYELRL------RPDLDACVFTGDASVVVD-VSAP 55
Query: 310 VTQIVLHSNVDSINAVSVLTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLY 489
+VL++ +++ S+ +G AP V+ E + L + + L +G+ L
Sbjct: 56 TRFLVLNAADLAVDRASIRFQGLAPTEVSLFEDDEI------LVLEFDGELPLGEGV-LA 108
Query: 490 IEYSSTMNEGPMKRGIWRGWYIDNDGTERIYATTHFQPYNARQAFPCWDEPLFKSVFKLH 669
++++ T+N+ RG +R Y + G + A T F+ +AR+ FPCWDEP FK+ FKL
Sbjct: 109 MDFNGTLND--QMRGFYRSKY-EYKGETKNMAVTQFEAVDARRCFPCWDEPAFKAKFKLT 165
Query: 670 VSKP 681
+ P
Sbjct: 166 LEVP 169
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 59.7 bits (138), Expect = 2e-09
Identities = 48/167 (28%), Positives = 77/167 (46%)
Frame = +1
Query: 181 RLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVS 360
RLP PL YD+ L A ++ G + + AV+ +VL NA
Sbjct: 13 RLPRCASPLSYDLRLRPDLAA-----CAFSGSAAVAV-AVSAPTRFLVL-------NAAE 59
Query: 361 VLTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKRGIW 540
+ +G + + F + + I + L +G+ L ++++ T+N+ RG +
Sbjct: 60 LAVDGSSDLVPSEVVQFEED---EIVVIGFGQDLPIGEGV-LKMDFTGTLND--QMRGFY 113
Query: 541 RGWYIDNDGTERIYATTHFQPYNARQAFPCWDEPLFKSVFKLHVSKP 681
R Y + G R A T F+ +AR+ FPCWDEP FK+ FKL + P
Sbjct: 114 RSKY-EYKGESRNMAVTQFEAADARRCFPCWDEPAFKAKFKLTLEVP 159
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 58.4 bits (135), Expect = 5e-09
Identities = 48/167 (28%), Positives = 80/167 (47%)
Frame = +1
Query: 181 RLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVS 360
RLP P Y++ L A + G ++ ++ V+ +VL++ +++ S
Sbjct: 13 RLPRFAAPRRYELRLRPDLAACV-----FSGEASVAVD-VSAPTRFLVLNAADLAVDRAS 66
Query: 361 VLTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKRGIW 540
+ +G AP V+ E E + L+ PL G L + ++ T+N+ RG +
Sbjct: 67 IRFQGLAPAEVSVFE----EDEILVLEFAGELPLGEGV---LAMRFNGTLND--QMRGFY 117
Query: 541 RGWYIDNDGTERIYATTHFQPYNARQAFPCWDEPLFKSVFKLHVSKP 681
R Y + G + A T F+ +AR+ FPCWDEP FK+ FKL + P
Sbjct: 118 RSKY-EYKGETKNMAVTQFESVDARRCFPCWDEPSFKAKFKLTLEVP 163
>05_03_0476 +
14499226-14499381,14499726-14499750,14500388-14500734,
14501608-14501886
Length = 268
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -1
Query: 651 LEQWLVPAWECLSRIIRLEMCCRVDPFCTIVVDVPSPPNTPLHWAFVHCARIFNIQRV 478
L +W + +SRI C R D C++V++ P N+ H+ +H + + R+
Sbjct: 143 LARWFSNQYVAISRIANFHWCSRDDSTCSLVLE---PENSIRHYRRLHVSMVLYQDRL 197
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +1
Query: 253 RPFSYDGRETIIIE---AVAEGVTQIVLHSN---VDSINAVSVLTEGGAPFPVNTREPFT 414
RP S G+ET E ++ G + +L SN D+I + +GGAPFP +
Sbjct: 198 RPTSSSGKETAQNEQGKSITAGPAEEILSSNSQSADNIKTDQHVYDGGAPFPGTSLPNKA 257
Query: 415 LEPQ 426
+PQ
Sbjct: 258 QQPQ 261
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 211 YDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVS-VLTEGGAP 384
+D+Y+++ + T+ ++ +GR ++ + I + N+D I ++ +L GG+P
Sbjct: 109 FDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVRNLDQILVMNGLLVPGGSP 167
>01_01_0937 -
7388230-7388283,7388957-7389091,7389201-7389365,
7389436-7389516,7389692-7389767,7389855-7389988,
7390082-7390174,7390885-7391018,7391125-7391533,
7392381-7392593
Length = 497
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 115 WHRDFEPIPITDNTTRSIEQVYRLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETI 285
W +D P P+ + ++ Y P+ L DIY+ L AE RP S D ETI
Sbjct: 211 WKKD-APSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAETRKRP-STDFMETI 265
>06_01_0492 -
3531640-3531735,3531841-3531895,3532164-3532592,
3532677-3532756
Length = 219
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 636 VPAWECLSRIIRLEMC-CRVDPFCTIVVDVPSPPNTPL 526
+PA + +R +C D CT+ D+ SPP+ PL
Sbjct: 63 IPAIAAVGGTLRFILCEWNADEMCTVHFDLTSPPDRPL 100
>04_03_0048 + 10157468-10158017,10158426-10158655
Length = 259
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 522 NEEGYLEGMVHRQRWYRKDLRDN 590
+ GY++ +V RQ W R+ LR N
Sbjct: 94 DSSGYIDALVTRQAWLRRRLRTN 116
>06_03_0370 -
19978462-19978800,19982435-19982591,19982683-19982917,
19983029-19983239,19985597-19985700,19985871-19985957,
19986225-19986354
Length = 420
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 235 FAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSIN 351
F RTD +D R IIE +A+G+ + LHS + I+
Sbjct: 177 FGPRTDWSLYWD-RLFAIIEGIAQGIVYLHLHSGLKIIH 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,506,223
Number of Sequences: 37544
Number of extensions: 447298
Number of successful extensions: 1138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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